Browse Element(s) Details


Os.428.1.S1_at

Description gb:AB054528.1
DB_XREF= gi:12313665
TID=Os.428.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA, complete cds, relating to carbonate stress
DEF=Oryza sativa (japonica cultivar-group) mRNA, complete cds, relating to carbonate stress.
FL= gb:AK063832.1 gb:AB054528.1 gb:AK121417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g557702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.428.1.S1_at--257--4491Chr03:31695140..31695164 (25 bp)
GCCGGCGAGCGTGATCCAAGAAGAC
LOC_Os03g55770
Os.428.1.S1_at--1071--2731Chr03:31695157..31695181 (25 bp)
AAGAAGACGCTTTCTTGTCCATCCT
LOC_Os03g55770
Os.428.1.S1_at--846--6391Chr03:31695182..31695206 (25 bp)
GATCGATTGCTTCGGCCAGTAGAGT
NONE
Os.428.1.S1_at--887--10451Chr03:31695211..31695235 (25 bp)
TTAGCTTGGCGTTACAGGGCACTCT
NONE
Os.428.1.S1_at--145--5111Chr03:31695229..31695253 (25 bp)
GCACTCTCTCCATCGTAAAATAGCT
NONE
Os.428.1.S1_at--857--5431Chr03:31695277..31695301 (25 bp)
GAACCTGGTGATTTCGACGGTCTCG
NONE
Os.428.1.S1_at--638--5751Chr03:31695292..31695316 (25 bp)
GACGGTCTCGTGTGATTTTTGTGTA
NONE
Os.428.1.S1_at--928--5251Chr03:31695348..31695372 (25 bp)
GAATCCTGGAAGTCTCTGTAGCGAA
NONE
Os.428.1.S1_at--7--2371Chr03:31695371..31695395 (25 bp)
AAAGCCCACTTTTCTTCAATCGAGA
NONE
Os.428.1.S1_at--714--7671Chr03:31695449..31695473 (25 bp)
GGGATTCTATAATTCATCGCCACCA
NONE
Os.428.1.S1_at--511--531Chr03:31695464..31695488 (25 bp)
ATCGCCACCACTCGGTTAAATCAGA
NONE
Target Sequence 
GCCGGCGAGCGTGATCCAAGAAGACGCTTTCTTGTCCATCCTGATCGATTGCTTCGGCCAGTAGAGTAGGCTTAGCTTGG
CGTTACAGGGCACTCTCTCCATCGTAAAATAGCTACTATACCTTTAGCTATGAATCTGAACCTGGTGATTTCGACGGTCT
CGTGTGATTTTTGTGTAAATCTTCTGAAATATCACTGCAGTNCTGTCTGAATCCTGGAAGTCTCTGTAGCGAAAGCCCAC
TTTTCTTCAATCGAGATATGATGGTTTAGCGGGTTCGAAGTACACGATCATGAGNCGATTCGAGTGAAGGGGATTCTATA
ATTCATCGCCACCACTCGGTTAAATCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis