Browse Element(s) Details


Os.42801.1.S1_at

Description gb:AK111671.1
DB_XREF= gi:37988334
TID=Os.42801.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to leucine-rich repeat transmembrane protein kinase 1 (B1056G08.44), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154F15, full insert sequence.
FL= gb:AK111826.1 gb:AK111671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4262611/11leucine-rich repeat transmembrane protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42801.1.S1_at--18--2291Chr07:25521231..25521255 (25 bp)
AAATGCTGTATATAGGCGCGAGAGT
LOC_Os07g42626
Os.42801.1.S1_at--510--4571Chr07:25521246..25521270 (25 bp)
GCGCGAGAGTGATGTGCTGTTCAAA
LOC_Os07g42626
Os.42801.1.S1_at--413--6271Chr07:25521256..25521280 (25 bp)
GATGTGCTGTTCAAAGATGTTTCTT
LOC_Os07g42626
Os.42801.1.S1_at--154--731Chr07:25521320..25521344 (25 bp)
ATGATTTGGGCGTGAGCTTAGCAGC
LOC_Os07g42626
Os.42801.1.S1_at--855--8651Chr07:25521349..25521373 (25 bp)
TGTGGCCTGTCACCTGTATGTGCAC
LOC_Os07g42626
Os.42801.1.S1_at--1092--7311Chr07:25521368..25521392 (25 bp)
GTGCACCAGTGCCAAACCAAGAAAC
LOC_Os07g42626
Os.42801.1.S1_at--505--1691Chr07:25521383..25521407 (25 bp)
ACCAAGAAACGGATGCTGATTGTTC
LOC_Os07g42626
Os.42801.1.S1_at--307--4751Chr07:25521397..25521421 (25 bp)
GCTGATTGTTCATGTGCTCGTCACA
LOC_Os07g42626
Os.42801.1.S1_at--395--7091Chr07:25521416..25521440 (25 bp)
GTCACACCTCATTGTCGACGAGCAC
LOC_Os07g42626
Os.42801.1.S1_at--148--5131Chr07:25521437..25521461 (25 bp)
GCACAACAAATCTTTTCACTCGAGA
LOC_Os07g42626
Os.42801.1.S1_at--1099--2394Chr12:25353510..25353532 (22 bp)
AAAAATAATACTCACTCCGTTCTCG
NONE
Target Sequence 
AAATGCTGTATATAGGCGCGAGAGTGATGTGCTGTTCAAAGATGTTTCTTTGCTAGGTGAGTAGTTTAAAAAAAAAAGTT
TGAAGTTTGATGATTTGGGCGTGAGCTTAGCAGCGCCCTGTGGCCTGTCACCTGTATGTGCACCAGTGCCAAACCAAGAA
ACGGATGCTGATTGTTCATGTGCTCGTCACACCTCATTGTCGACGAGCACAACAAATCTTTTCACTCGAGAAAAAAATAA
TACTCACTCCGTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis