Browse Element(s) Details


Os.43493.1.S1_at

Description gb:NM_188434.1
DB_XREF= gi:34903951
GEN=OSJNBa0038J17.21
TID=Os.43493.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.21 (OSJNBa0038J17.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0038J17.21 (OSJNBa0038J17.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g115902/113-oxoacyl-synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11590Os.18774.1.S1_s_at11/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11590Os.43493.1.S1_at2/111+6250523..62540003-oxoacyl-synthase, putative, expressed
LOC_Os01g11600NANA1+6254717..6255066hypothetical protein
LOC_Os01g11609NANA1+6258125..6258316NA
LOC_Os01g11620Os.43491.1.S1_x_at11/111+6264242..6267574GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11629NANA1+6272410..6272696NA
LOC_Os01g11640OsAffx.11011.1.S1_at11/111+6274280..6274516hypothetical protein
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43493.1.S1_at--673--3271Chr01:6253066..6253090 (25 bp)
CAAAAAGGACTTGCGATGTGCTACA
LOC_Os01g11590
Os.43493.1.S1_at--173--8671Chr01:6253082..6253106 (25 bp)
TGTGCTACAAACCAACTTCAAAGTA
LOC_Os01g11590
Os.43493.1.S1_at--422--6511Chr01:6254336..6254360 (25 bp)
GATATACATATACGGCCGTTGCACC
NONE
Os.43493.1.S1_at--783--9031Chr01:6254355..6254379 (25 bp)
TGCACCGGTCAAACACTGGCGGCGT
NONE
Os.43493.1.S1_at--1067--6791Chr01:6254405..6254429 (25 bp)
GTTTGGCCCTAGCAACGGCTCGGAT
NONE
Os.43493.1.S1_at--134--7971Chr01:6254426..6254450 (25 bp)
GGATCTGCCCCTGGCGGATTATCTC
NONE
Os.43493.1.S1_at--370--2851Chr01:6254463..6254487 (25 bp)
AAGTCTCCAACAACCGTTCTACACT
NONE
Os.43493.1.S1_at--888--4031Chr01:6254477..6254501 (25 bp)
CGTTCTACACTTGGCGGCGGCAGAA
NONE
Os.43493.1.S1_at--471--1411Chr01:6254572..6254596 (25 bp)
AGACAGCGTGGTGGTTTTCGTCGTC
NONE
Os.43493.1.S1_at--583--7191Chr01:6254606..6254630 (25 bp)
GTCGGCTTCATATATCCCCTGGGAT
NONE
Os.43493.1.S1_at--140--231Chr01:6254617..6254641 (25 bp)
ATATCCCCTGGGATTCCGCTTCGGT
NONE
Target Sequence 
CAAAAAGGACTTGCGATGTGCTACAAACCAACTTCAAAGTAGTAGAGGAGTAATCGTGCCCAGATGTCCGATCCTGTATC
GTCCAGAATGCTTCTTCCATCCTAATCACCGCATTCCAGTACTATCCATAATCCAAAACCTCTCTCCTGCTCCGATTGCG
TATTATCAAAAACGGAAGAGATCAATCAGAGTTTGGATTCAGATATACATATACGGCCGTTGCACCGGTCAAACACTGGC
GGCGTCGCACGGCAACTCCCACGACCGCCCGTTTGGCCCTAGCAACGGCTCGGATCTGCCCCTGGCGGATTATCTCAACC
CCGGCCCCAAGTCTCCAACAACCGTTCTACACTTGGCGGCGGCAGAAGGCGACTCCGCGAGACGCCGAGACAGCGTGGTG
GTTTTCGTCGTCGTCGTCGTCGTCGGCTTCATATATCCCCTGGGATTCCGCTTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis