Browse Element(s) Details


Os.43596.1.S1_at

Description gb:CB620528
DB_XREF= gi:29615516
DB_XREF=OSIIEa05N03.r
CLONE=OSIIEa05N03
TID=Os.43596.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytokinin oxidase (P0419B01.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1011011/11Cytokinin dehydrogenase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein
LOC_Os01g10070OsAffx.23180.1.S1_x_at11/111+5253316..5254128expressed protein
LOC_Os01g10070OsAffx.23180.1.S1_at11/111+5253316..5254128expressed protein
LOC_Os01g10080Os.2196.1.S1_a_at11/111+5255058..5257819expressed protein
LOC_Os01g10090OsAffx.13428.1.S1_s_at11/111+5257991..5259700pentatricopeptide, putative
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g10120Os.47130.4.A1_x_at4/111+5277984..5278307retrotransposon protein, putative, unclassified
LOC_Os01g10130Os.32212.2.S1_x_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.32212.1.A1_at11/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed
LOC_Os01g10130Os.5217.1.S1_at1/111+5284938..5289760RNA-dependent RNA polymerase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43596.1.S1_at--10--1871Chr01:5267812..5267836 (25 bp)
ACGACGAGATCTTGGGTTTCTGCGA
LOC_Os01g10110
Os.43596.1.S1_at--346--7951Chr01:5267779..5267803 (25 bp)
GGATAGCCTACAAGCAGTACCTGCC
LOC_Os01g10110
Os.43596.1.S1_at--1012--3771Chr01:5267705..5267729 (25 bp)
CTCTGGCCAAGATTCGTGCAGCGGA
LOC_Os01g10110
Os.43596.1.S1_at--731--2831Chr01:5267675..5267699 (25 bp)
AAGTATGATCCAAAGGCCATCCTGT
LOC_Os01g10110
Os.43596.1.S1_at--840--10371Chr01:5267635..5267659 (25 bp)
TTTTCACGTCACCACTCGCATGAAA
LOC_Os01g10110
Os.43596.1.S1_at--744--5131Chr01:5267598..5267622 (25 bp)
GCAAATGCATATCTACATGCGTATA
LOC_Os01g10110
Os.43596.1.S1_at--444--811Chr01:5267538..5267562 (25 bp)
ATGGGTGTACTGTGCATACGTTATA
LOC_Os01g10110
Os.43596.1.S1_at--430--4951Chr01:5267525..5267549 (25 bp)
GCATACGTTATAGCACACTGCAGCT
LOC_Os01g10110
Os.43596.1.S1_at--845--5111Chr01:5267513..5267537 (25 bp)
GCACACTGCAGCTAATTAAGCTTGA
LOC_Os01g10110
Os.43596.1.S1_at--491--1191Chr01:5267371..5267395 (25 bp)
AGTAGTACTGTGATGCATGCATGCC
LOC_Os01g10110
Os.43596.1.S1_at--53--6471Chr01:5267335..5267359 (25 bp)
GATAAGTACGTGTGTGTGGCCGCAT
LOC_Os01g10110
Target Sequence 
ACGACGAGATCTTGGGTTTCTGCGAGGTGGCCGGGATAGCCTACAAGCAGTACCTGCCTTACTACNGCAGCCAGGCAGAG
TGGCAGAAGCGGCACTTCGGTGCCAANCTCTGGCCAAGATTCGTGCAGCGGAAGAGCAAGTATGATCCAAAGGCCATCCT
GTCCCGTGGCCAGGGGATTTTCACGTCACCACTCGCATGAAATGACACATGTATGCAAATGCATATCTACATGCGTATAT
ATACACGTATATATACGTATGTATGCATACACATATGGGTGTACTGTGCATACGTTATAGCACACTGCAGCTAATTAAGC
TTGACAGGGGGAGATCGATCAATGGACAATGCTCTAGTCAAGCTAATATAAATAATGGAGTAGTAGTATATATGTAGTGC
GAGATAATTAAGTAGTGTGTTTGCCTACTAAAAGGAGAGGCAAAGTAGTACTGTGATGCATGCATGCCAACTAATAGGGG
ATAAGTACGTGTGTGTGGCCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis