Browse Element(s) Details


OsAffx.13428.1.S1_s_at

Description gb:NM_188254.1
DB_XREF= gi:34903591
GEN=P0419B01.9
TID=OsAffx.13428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0419B01.9 (P0419B01.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1009011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein
LOC_Os01g10070OsAffx.23180.1.S1_x_at11/111+5253316..5254128expressed protein
LOC_Os01g10070OsAffx.23180.1.S1_at11/111+5253316..5254128expressed protein
LOC_Os01g10080Os.2196.1.S1_a_at11/111+5255058..5257819expressed protein
LOC_Os01g10090OsAffx.13428.1.S1_s_at11/111+5257991..5259700pentatricopeptide, putative
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g10120Os.47130.4.A1_x_at4/111+5277984..5278307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13428.1.S1_s_at--131--8791Chr01:5258556..5258580 (25 bp)
TGTTCACCGACATGGCCGGAGCTAC
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--677--4211Chr01:5258456..5258480 (25 bp)
CCGCCTGTTCGATCGCATGGTGAGA
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--450--7391Chr01:5258437..5258461 (25 bp)
GTGAGAGCGCACAAGATCTCCCCAT
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--598--6351Chr01:5258333..5258357 (25 bp)
GATGCCGGTGAGACCTGACCTGTGC
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--58--5931Chr01:5258301..5258325 (25 bp)
GAGCATTGCTGAATTCCTGCAGGAT
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--671--5011Chr01:5258283..5258307 (25 bp)
GCAGGATTCATGGTGATGCAGCCAT
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--1064--10671Chr01:5258244..5258268 (25 bp)
TTGCCAATGTCCTGCAATCCGAGGA
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--209--2111Chr01:5258202..5258226 (25 bp)
ACATGCTGATCACCAACCTGTACGC
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--1032--8511Chr01:5258085..5258109 (25 bp)
TGGACAACAAGGTGGTCGCCTTCGC
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--690--451Chr01:5258040..5258064 (25 bp)
ATCTCACCGGAGCTGAGGATGTCTT
LOC_Os01g10090
OsAffx.13428.1.S1_s_at--744--6271Chr01:5258023..5258047 (25 bp)
GATGTCTTCGGAATGCTCGATGATC
LOC_Os01g10090
Target Sequence 
TGTTCACCGACATGGCCGGAGCTACGGTTGAGCCCGACGGCGTCACCTTCGTCGCCGTCCTGTCGGCGTGCGGCCACGCC
GGGCGTGTCACGGAGGGCCGCCGCCTGTTCGATCGCATGGTGAGAGCGCACAAGATCTCCCCATCCATGGAGCACTACAC
ATGCATGGTCTACCTCCTCGGCCGCGCCGGCTTGCTCCGGGACGCGTCGGAGCTCGTCGAGACGATGCCGGTGAGACCTG
ACCTGTGCGTGTGGGGAGCATTGCTGAATTCCTGCAGGATTCATGGTGATGCAGCCATGGCCGAGGCCACCATTGCCAAT
GTCCTGCAATCCGAGGACCAGAGCACCGGCAACCACATGCTGATCACCAACCTGTACGCCATGTGTGGCATGTGGGACGA
GTCCAAGAAGGTGAGGGTGATGACGAAGGAGGCCGGATTGAGGAAGAATCCGGGGCAGAGCTGGATTGAAGTGGACAACA
AGGTGGTCGCCTTCGCCGCCGGGAGCGCGCCGCCGAATCTCACCGGAGCTGAGGATGTCTTCGGAATGCTCGATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13428.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis