Browse Element(s) Details


Os.2196.1.S1_a_at

Description gb:AK102992.1
DB_XREF= gi:32988201
TID=Os.2196.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.8 (P0419B01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116D22, full insert sequence.
FL= gb:AK102992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1008011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein
LOC_Os01g10070OsAffx.23180.1.S1_x_at11/111+5253316..5254128expressed protein
LOC_Os01g10070OsAffx.23180.1.S1_at11/111+5253316..5254128expressed protein
LOC_Os01g10080Os.2196.1.S1_a_at11/111+5255058..5257819expressed protein
LOC_Os01g10090OsAffx.13428.1.S1_s_at11/111+5257991..5259700pentatricopeptide, putative
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed
LOC_Os01g10120Os.47130.4.A1_x_at4/111+5277984..5278307retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2196.1.S1_a_at--178--1091Chr01:5257010..5257034 (25 bp)
AGGGCTAACAGTTATGACCGCCTCT
LOC_Os01g10080
Os.2196.1.S1_a_at--489--5311Chr01:5257220..5257244 (25 bp)
GAAGGATGCGGATATCTACAACTAT
LOC_Os01g10080
Os.2196.1.S1_a_at--720--1631Chr01:5257496..5257520 (25 bp)
AGCGTCACAGGAAGCTGACCTCAAT
LOC_Os01g10080
Os.2196.1.S1_a_at--477--3971Chr01:5257564..5257588 (25 bp)
TCGTCAATAGTAGCCCGAACCCGTA
LOC_Os01g10080
Os.2196.1.S1_a_at--877--8611Chr01:5257637..5257661 (25 bp)
TGGTGTAATGCGCTTGCCAAGCTCT
LOC_Os01g10080
Os.2196.1.S1_a_at--11--9211Chr01:5257651..5257675 (25 bp)
TGCCAAGCTCTTGGGCGCCTGAAAG
LOC_Os01g10080
Os.2196.1.S1_a_at--770--5571Chr01:5257671..5257695 (25 bp)
GAAAGTCCAGAGTCCTTGACCATAA
LOC_Os01g10080
Os.2196.1.S1_a_at--206--6551Chr01:5257705..5257729 (25 bp)
GATTCAGGTGGTTGGCTGACGACCA
LOC_Os01g10080
Os.2196.1.S1_a_at--370--4751Chr01:5257719..5257743 (25 bp)
GCTGACGACCAGCAAATGCTCTCAT
LOC_Os01g10080
Os.2196.1.S1_a_at--930--3011Chr01:5257733..5257757 (25 bp)
AATGCTCTCATATATCCTATCTGGT
LOC_Os01g10080
Os.2196.1.S1_a_at--1071--211Chr01:5257742..5257766 (25 bp)
ATATATCCTATCTGGTACTTCGGCC
LOC_Os01g10080
Target Sequence 
AGGGCTAACAGTTATGACCGCCTCTGCGAACAGGTGCATAAATTGGAAGCCGAGCACAAAAGGCTAAAGAAGGATGCGGA
TATCTACAACTATATTCAAGAGCAGCTTCAGATGTCAGAGTCATACAAACTGTTGATTGAGCTTAGTGCGTTGGTGGAGA
ANGCCNAACGTGANGATGCCCTTGCCACCGAGGCCGCAGAGATGACANTCGAGGAGCTGCTGGCTCAGGANAANANCGAN
GCCGNCTTCTGGCAGCGTCACAGGAAGCTGACCTCAATCNTACCCAAGTAGAGNTTGATAACTGACCNGCGCGATTTCAN
CATCGTCAATAGTAGCCCGAACCCGTAACCAGAANTTGTTCCTGGNGGAGCTTTTAATGTTGCTAGTTGCAACCGTGGTG
TAATGCGCTTGCCAAGCTCTTGGGCGCCTGAAAGTCCAGAGTCCTTGACCATAAAACCTGAGAGATTCAGGTGGTTGGCT
GACGACCAGCAAATGCTCTCATATATCCTATCTGGTACTTCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2196.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis