Browse Element(s) Details


Os.45942.1.S1_at

Description gb:AU029985
DB_XREF= gi:3763233
DB_XREF=AU029985
CLONE=E50436_1A
TID=Os.45942.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ethylene-responsive RNA helicase (P0419B01.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1005011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10030Os.53374.1.S1_at11/111+5223846..5226768expressed protein
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein
LOC_Os01g10070OsAffx.23180.1.S1_x_at11/111+5253316..5254128expressed protein
LOC_Os01g10070OsAffx.23180.1.S1_at11/111+5253316..5254128expressed protein
LOC_Os01g10080Os.2196.1.S1_a_at11/111+5255058..5257819expressed protein
LOC_Os01g10090OsAffx.13428.1.S1_s_at11/111+5257991..5259700pentatricopeptide, putative
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein
LOC_Os01g10110Os.43596.1.S1_at11/111+5267274..5272324Cytokinin dehydrogenase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45942.1.S1_at--1072--7991Chr01:5245046..5245070 (25 bp)
GGATGGCAGCCGGATATTAATATTT
LOC_Os01g10050
Os.45942.1.S1_at--57--6451Chr01:5245000..5245024 (25 bp)
GATCAAATCACTAGACAGCTTCGGA
LOC_Os01g10050
Os.45942.1.S1_at--1100--3831Chr01:5244963..5244987 (25 bp)
CTGCTCTGTCTATCCATGGTGACAA
LOC_Os01g10050
Os.45942.1.S1_at--656--2431Chr01:5244892..5244916 (25 bp)
AAAAGCCCTATCATGACAGCGACTG
LOC_Os01g10050
Os.45942.1.S1_at--105--7551Chr01:5244782..5244889 (25 bp)
GTGGCTGCTCGAGGCTTAGATGTTA
LOC_Os01g10050
Os.45942.1.S1_at--1002--10531Chr01:5244712..5244736 (25 bp)
TTCATCGCATTGGTCGAACTGGCAG
LOC_Os01g10050
Os.45942.1.S1_at--125--9851Chr01:5244665..5244689 (25 bp)
TACACGTTTTTCACTGCTGCTAATG
LOC_Os01g10050
Os.45942.1.S1_at--615--4771Chr01:5244650..5244674 (25 bp)
GCTGCTAATGCCAGATTTGCCAAGG
LOC_Os01g10050
Os.45942.1.S1_at--663--3731Chr01:5244574..5244598 (25 bp)
CTAATATGGGTCGTGGTGCACCACC
LOC_Os01g10050
Os.45942.1.S1_at--799--3651Chr01:5244400..5244571 (25 bp)
CTTCTTCAGGCCACCGTGATAGATA
LOC_Os01g10050
Os.45942.1.S1_at--1146--8411Chr01:5244359..5244383 (25 bp)
GGCCGGTCATGGAGCTGATTTTCAT
LOC_Os01g10050
Target Sequence 
GGATGGCAGCCGGATATTAATATTTATGGACACGAAGAAGGGATGTGATCAAATCACTAGACAGCTTCGGATGGATGGTT
GGCCTGCTCTGTCTATCCATGGTGACAAAAGCCAAGCTGAGAGGGATTGGGTTCTTTCTGAATTTAAATCAGGGAAAAGC
CCTATCATGACAGCGACTGATGTGGCTGCTCGAGGCTTAGATGTTAAGGATGTTAAATATGTCATTAACTATGACTTTCC
GGGATCATTGGAGGATTATGTTCATCGCATTGGTCGAACTGGCAGAGCTGGAGCAAAAGGAACAGCTTACACGTTTTTCA
CTGCTGCTAATGCCAGATTTGCCAAGGATCTGATCAACATACTAGAAGAAGCTGGACAAAAGGTCAGCCCTGAATTAGCT
AATATGGGTCGTGGTGCACCACCCCCTTCTTCAGGCCACCGTGATAGATATAGAGGGTATGGAGNTGGCCGGTCATGGAG
CTGATTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis