Browse Element(s) Details


Os.53374.1.S1_at

Description gb:AK072341.1
DB_XREF= gi:32982364
TID=Os.53374.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052M08, full insert sequence.
FL= gb:AK072341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1003011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09990Os.32770.1.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.1.S1_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.2.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.3.S1_x_at5/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.1.S1_x_at2/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g10000NANA1+5207270..5210094hypothetical protein
LOC_Os01g10010OsAffx.23179.1.S1_at3/111+5212648..5213424PRA1 family protein
LOC_Os01g10020Os.4196.1.S1_at11/111+5215375..5217196Type I phosphodiesterase/nucleotide pyrophosphatase family protein, expressed
LOC_Os01g10030Os.53374.1.S1_at11/111+5223846..5226768expressed protein
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53374.1.S1_at--1095--8771Chr01:5226201..5226225 (25 bp)
TGTTTACTGCAATCCCACATTGTGG
LOC_Os01g10030
Os.53374.1.S1_at--1139--531Chr01:5226212..5226236 (25 bp)
ATCCCACATTGTGGCGCAATTAGGC
LOC_Os01g10030
Os.53374.1.S1_at--487--571Chr01:5226384..5226408 (25 bp)
ATCCATCTGTTCGTCGGGTTCGTTG
LOC_Os01g10030
Os.53374.1.S1_at--172--8791Chr01:5226391..5226415 (25 bp)
TGTTCGTCGGGTTCGTTGTTCTCTA
LOC_Os01g10030
Os.53374.1.S1_at--525--4331Chr01:5226430..5226454 (25 bp)
CCATCTCTTCTAATGTCGGTCGCCG
LOC_Os01g10030
Os.53374.1.S1_at--530--8011Chr01:5226471..5226495 (25 bp)
GGAGGCTAGTCGTCGCTAGGCTCAA
LOC_Os01g10030
Os.53374.1.S1_at--1083--5551Chr01:5226616..5226640 (25 bp)
GAAAGGAGGCTTGTTGGCCAACTTT
LOC_Os01g10030
Os.53374.1.S1_at--371--8451Chr01:5226630..5226654 (25 bp)
TGGCCAACTTTTCGTCCGTGGAGCT
LOC_Os01g10030
Os.53374.1.S1_at--654--7251Chr01:5226643..5226667 (25 bp)
GTCCGTGGAGCTCAATTTCTCTTGC
LOC_Os01g10030
Os.53374.1.S1_at--692--4591Chr01:5226676..5226700 (25 bp)
GCGACACCTAGTTTCGTCAAACGTG
LOC_Os01g10030
Os.53374.1.S1_at--1133--10331Chr01:5226740..5226764 (25 bp)
TTTAGATGCGGTTAATACTCCCTCC
LOC_Os01g10030
Target Sequence 
TGTTTACTGCAATCCCACATTGTGGCGCAATTAGGCTTAAAAGATTCATCTCGTAATTTACACGCAATCTGTGTAATTAG
TTATTTTTTCGTCTATATTTAATACTCCATGCATGTGTCAAACATTCGATGTGACAGGGTGTAAAATTTTACCAGTAAAT
CTAAACGGGGCCTAGATCCATCCATCCATCTGTTCGTCGGGTTCGTTGTTCTCTACTCTCTCTCTCTCCCCATCTCTTCT
AATGTCGGTCGCCGCCCGGGATCAAGAGTAGGAGGCTAGTCGTCGCTAGGCTCAACCCTCCCCACCACTTCCCCTTCTTT
CTTTCCCTGCCTTTCTCTCCTTCTCATGGTCCCTCCTTGTCGCCGTCGGGGAGCCAGAGCAAGAGTCTGGTCATGGAAGG
ACGGAAAGAGAGCTTGAAAGGAGGCTTGTTGGCCAACTTTTCGTCCGTGGAGCTCAATTTCTCTTGCCCTCGCCAGCGAC
ACCTAGTTTCGTCAAACGTGGAAAAAAGAGGCCACAGAGGAGCAAGGGGCATTATCGTATTTAGATGCGGTTAATACTCC
CTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis