Browse Element(s) Details


Os.4196.1.S1_at

Description gb:U25430.1
DB_XREF= gi:818848
TID=Os.4196.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4196 (NCBI UniGene Cluster)
DEF=Oryza sativa nucleotide pyrophosphatase precursor, mRNA, complete cds.
PROD=nucleotide pyrophosphatase precursor
FL= gb:U25430.1 gb:AK101742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1002011/11Type I phosphodiesterase/nucleotide pyrophosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09980OsAffx.1975.1.S1_at11/111+5192520..5193754hypothetical protein
LOC_Os01g09990Os.32770.1.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.1.S1_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.2.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.3.S1_x_at5/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.1.S1_x_at2/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g10000NANA1+5207270..5210094hypothetical protein
LOC_Os01g10010OsAffx.23179.1.S1_at3/111+5212648..5213424PRA1 family protein
LOC_Os01g10020Os.4196.1.S1_at11/111+5215375..5217196Type I phosphodiesterase/nucleotide pyrophosphatase family protein, expressed
LOC_Os01g10030Os.53374.1.S1_at11/111+5223846..5226768expressed protein
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009117biological_processnucleotide metabolism
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4196.1.S1_at--109--7891Chr01:5216680..5216704 (25 bp)
GGTTATGACAATGCCTTCTTCTCAA
LOC_Os01g10020
Os.4196.1.S1_at--338--10151Chr01:5216718..5216742 (25 bp)
TATCGCGCATGGTCCTCGTTTTGAA
LOC_Os01g10020
Os.4196.1.S1_at--698--10011Chr01:5216748..5216772 (25 bp)
TAGAGTCGTGCCATCCTTTGAGAAC
LOC_Os01g10020
Os.4196.1.S1_at--263--2211Chr01:5216783..5216807 (25 bp)
ACAACGTTATTGCTTCCATTCTCAA
LOC_Os01g10020
Os.4196.1.S1_at--72--6751Chr01:5216831..5216855 (25 bp)
GTTCATCTTCTTTTCCTGACACAAT
LOC_Os01g10020
Os.4196.1.S1_at--867--8951Chr01:5216847..5216871 (25 bp)
TGACACAATTCTTTTGCCGAGTGAA
LOC_Os01g10020
Os.4196.1.S1_at--700--2311Chr01:5216911..5216935 (25 bp)
AAAGGTCTTGCTGTTGGTATCCTCC
LOC_Os01g10020
Os.4196.1.S1_at--571--7851Chr01:5216926..5216950 (25 bp)
GGTATCCTCCTTTAGTCGTAATTGC
LOC_Os01g10020
Os.4196.1.S1_at--1133--6571Chr01:5216972..5216996 (25 bp)
GATTCGTGTCACTAGTGGCTATTCA
LOC_Os01g10020
Os.4196.1.S1_at--728--6791Chr01:5217060..5217084 (25 bp)
GTTATCATGTCTTATCCTTAGCGGT
LOC_Os01g10020
Os.4196.1.S1_at--105--6771Chr01:5217111..5217135 (25 bp)
GTTCAATTAAGCTCGCATTCTCTGC
LOC_Os01g10020
Target Sequence 
GGTTATGACAATGCCTTCTTCTCAATGAGAACCATATTTATCGCGCATGGTCCTCGTTTTGAAGGTGGTAGAGTCGTGCC
ATCCTTTGAGAACGTGGAGATATACAACGTTATTGCTTCCATTCTCAATTTGGAGCCAGCTCCAAACAATGGTTCATCTT
CTTTTCCTGACACAATTCTTTTGCCGAGTGAATGATCACATATACATGTGACTGCTGTGGTTTTGGATGAGAAAGGTCTT
GCTGTTGGTATCCTCCTTTAGTCGTAATTGCACTTGTACACTTATCATATTAGATTCGTGTCACTAGTGGCTATTCACTG
CCTGAATGCAAATGCTGCTAGTAGAGAGTATCTTTGTCCTTATGGNCAACATTTGCTGTTGTTATCATGTCTTATCCTTA
GCGGTTTTCTTATGCTTAAATTTTCATGCAAGTTCAATTAAGCTCGCATTCTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis