Browse Element(s) Details


OsAffx.1975.1.S1_at

Description tigr:9629.m00949
TID=OsAffx.1975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0998011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09940OsAffx.23176.2.S1_at2/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.1.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09940OsAffx.23176.3.S1_x_at1/111+5168029..5168616hypothetical protein
LOC_Os01g09950OsAffx.23177.2.S1_s_at11/111+5170357..5171074hypothetical protein
LOC_Os01g09950OsAffx.23177.1.S1_at8/111+5170357..5171074hypothetical protein
LOC_Os01g09960Os.41695.5.S1_x_at8/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.3.S1_x_at6/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.2.S1_x_at5/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.4.S1_x_at1/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09970NANA1+5187729..5188217hypothetical protein
LOC_Os01g09980OsAffx.1975.1.S1_at11/111+5192520..5193754hypothetical protein
LOC_Os01g09990Os.32770.1.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.1.S1_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.2.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.3.S1_x_at5/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.1.S1_x_at2/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g10000NANA1+5207270..5210094hypothetical protein
LOC_Os01g10010OsAffx.23179.1.S1_at3/111+5212648..5213424PRA1 family protein
LOC_Os01g10020Os.4196.1.S1_at11/111+5215375..5217196Type I phosphodiesterase/nucleotide pyrophosphatase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1975.1.S1_at--210--4871Chr01:5192676..5192700 (25 bp)
GCTAGAAACCACATTCAAAATTTAG
LOC_Os01g09980
OsAffx.1975.1.S1_at--1130--5271Chr01:5193353..5193377 (25 bp)
GAATGTATTCTGGACAATTTTTGGT
LOC_Os01g09980
OsAffx.1975.1.S1_at--509--6472Chr01:5193445..5193469 (25 bp)
GATAAATGAATTAATGCCAGTTGCA
LOC_Os01g09980
OsAffx.1975.1.S1_at--271--10211Chr01:5193475..5193499 (25 bp)
TATTGAAGCCATACAGCAAAAGCCC
LOC_Os01g09980
OsAffx.1975.1.S1_at--977--5112Chr01:5193490..5193514 (25 bp)
GCAAAAGCCCATTTATGTGGTTTTT
LOC_Os01g09980
OsAffx.1975.1.S1_at--155--5311Chr01:5193515..5193539 (25 bp)
GAAGGAAGAGTACCAGGCGTCTATA
LOC_Os01g09980
OsAffx.1975.1.S1_at--28--911Chr01:5193529..5193553 (25 bp)
AGGCGTCTATATATCCTTTGAAGAG
LOC_Os01g09980
OsAffx.1975.1.S1_at--328--9811Chr01:5193570..5193594 (25 bp)
TAGACGCAAAGCTAACAGTAGGAAT
LOC_Os01g09980
OsAffx.1975.1.S1_at--313--2291Chr01:5193611..5193635 (25 bp)
AAAGACATTGAAGAACCATTAGGAC
LOC_Os01g09980
OsAffx.1975.1.S1_at--993--10411Chr01:5193661..5193685 (25 bp)
TTATTATCTAGAGCCAGCGGCAAAG
LOC_Os01g09980
OsAffx.1975.1.S1_at--211--5872Chr01:5193671..5193695 (25 bp)
GAGCCAGCGGCAAAGGAATATATTC
LOC_Os01g09980
Target Sequence 
GCTAGAAACCACATTCAAAATTTAGCAAAGTTAGCAGGACCATTATATGCTATATTAAGAAAAAATGGTATGAAGAAATC
TATGAATTATAATGGAGTTGAATTCTTCACTTTTGGGGAAGATAATAAACTCAGAATATTCCCACCAAACTCTTATAAAT
TTAAACCAAAGGACCATATAATCATATATGAAGTGCAAGAATGTATTCTGGACAATTTTTGGTATCAATATAATAATATG
AAGGGCTATATCCTATCAATATTAAATAGTCTTGCTGAATATTTTCATTTGATAAATGAATTAATGCCAGTTGCAAAAAA
TATTGAAGCCATACAGCAAAAGCCCATTTATGTGGTTTTTGAAGGAAGAGTACCAGGCGTCTATATATCCTTTGAAGAGA
TAATATCTCAAAAAATAGACGCAAAGCTAACAGTAGGAATATCATGGAAGAAATATAAAGACATTGAAGAACCATTAGGA
CAAGCTAGGAAAATATTGGGAATAAATTATTATCTAGAGCCAGCGGCAAAGGAATATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis