Browse Element(s) Details


Os.43600.1.S1_at

Description gb:C97894
DB_XREF= gi:3760640
DB_XREF=C97894
CLONE=C0085_11A
TID=Os.43600.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytochrome P450-like protein (P0419B01.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1004011/11Cytochrome P450 90D2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10000NANA1+5207270..5210094hypothetical protein
LOC_Os01g10010OsAffx.23179.1.S1_at3/111+5212648..5213424PRA1 family protein
LOC_Os01g10020Os.4196.1.S1_at11/111+5215375..5217196Type I phosphodiesterase/nucleotide pyrophosphatase family protein, expressed
LOC_Os01g10030Os.53374.1.S1_at11/111+5223846..5226768expressed protein
LOC_Os01g10040Os.43600.1.S1_at11/111+5233425..5241321Cytochrome P450 90D2, putative, expressed
LOC_Os01g10050Os.45942.1.S1_at11/111+5242607..5247918DEAD/DEAH box helicase family protein, expressed
LOC_Os01g10060OsAffx.10990.1.S1_s_at11/111+5248690..5249926hypothetical protein
LOC_Os01g10070OsAffx.23180.1.S1_x_at11/111+5253316..5254128expressed protein
LOC_Os01g10070OsAffx.23180.1.S1_at11/111+5253316..5254128expressed protein
LOC_Os01g10080Os.2196.1.S1_a_at11/111+5255058..5257819expressed protein
LOC_Os01g10090OsAffx.13428.1.S1_s_at11/111+5257991..5259700pentatricopeptide, putative
LOC_Os01g10100Os.7918.1.S1_s_at11/111+5260224..5262904expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042814biological_processmonopolar cell growth
GO:0004497molecular_functionmonooxygenase activity
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0010012molecular_functionsteroid 22-alpha hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43600.1.S1_at--622--8771Chr01:5236689..5236713 (25 bp)
TGTTTGTGTACTTCCGGTCAGTCCA
LOC_Os01g10040
Os.43600.1.S1_at--141--4191Chr01:5240778..5240802 (25 bp)
CCCATCAGGGTCACCGCCAAGGAGG
LOC_Os01g10040
Os.43600.1.S1_at--389--9991Chr01:5240818..5240842 (25 bp)
TAGCCACCACTACTACTATACCGAT
LOC_Os01g10040
Os.43600.1.S1_at--308--10171Chr01:5240834..5240858 (25 bp)
TATACCGATCACCATACTCAACTAG
LOC_Os01g10040
Os.43600.1.S1_at--899--6172Chr01:5240861..5240885 (25 bp)
GAGGAGATCCATCAGATGCATGCAT
LOC_Os01g10040
Os.43600.1.S1_at--829--4051Chr01:5240890..5240914 (25 bp)
CGATGCAGATCGGTCGGTCGAGTAC
LOC_Os01g10040
Os.43600.1.S1_at--222--7811Chr01:5240905..5240929 (25 bp)
GGTCGAGTACGAGTAGCCCACACGA
LOC_Os01g10040
Os.43600.1.S1_at--1157--2151Chr01:5240924..5240948 (25 bp)
ACACGAGTCGACACATGCATGCAAC
LOC_Os01g10040
Os.43600.1.S1_at--160--6671Chr01:5240956..5240980 (25 bp)
GTTGCACACACCAAGATGCACATAT
LOC_Os01g10040
Os.43600.1.S1_at--544--271Chr01:5240990..5241014 (25 bp)
ATATGTCGATCTATACTGCTACCTA
LOC_Os01g10040
Os.43600.1.S1_at--197--6431Chr01:5240997..5241021 (25 bp)
GATCTATACTGCTACCTACCTATAT
LOC_Os01g10040
Target Sequence 
TGTTTGTGTACTTCCGGTCAGTCCACCTCGATGATACGCTCTACGATGAGCCCTACAAGTTCAACCCATGGAGGTGGAAG
GAGAAGGACATGAGCAATGGCAGCTTCACTCCTTTTGGTGGTGGGCAGAGGCTGTGCCCAGGCCTGGATCTGGCCAGGCT
GGAAGCTTCCATCTTCCTTCACCACTTGGTCACCAGCTTCAGGTGGGTGGCGGAGGAGGACCACATCGTCAACTTCCCCA
CCGTGCGGCTCAAGCGGGGCATGCCCATCAGGGTCACCGCCAAGGAGGACGACGACTAGCCACTAGCCACCACTACTACT
ATACCGATCACCATACTCAACTAGTAGAGGAGATCCATCAGATGCATGCATGGATCGATGCAGATCGGTCGGTCGAGTAC
GAGTAGCCCACACGAGTCGACACATGCATGCAACAAGCCAAGTTGCACACACCAAGATGCACATATATATCATCTATATG
TCGATCTATACTGCTACCTACCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis