Browse Element(s) Details


Os.4378.4.S1_x_at

Description gb:NM_193396.1
DB_XREF= gi:34913875
GEN=B1156H12.22
TID=Os.4378.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.22 (B1156H12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1156H12.22 (B1156H12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3695010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36920Os.14280.2.S1_x_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_a_at11/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.2.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.50777.1.S1_at9/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_x_at8/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.1.S1_at6/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36920Os.14280.3.S1_x_at5/111+20897826..20903053Spliceosome RNA helicase Bat1, putative, expressed
LOC_Os01g36930Os.40926.1.S1_x_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.40926.1.S1_at11/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36930Os.9089.1.S1_at9/111+20908462..20916430Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os01g36940Os.40925.1.S1_at8/111+20922069..20925696F-box domain containing protein, expressed
LOC_Os01g36950Os.4378.2.S1_a_at11/111+20926161..20929106expressed protein
LOC_Os01g36950OsAffx.2171.1.S1_at11/111+20926161..20929106expressed protein
LOC_Os01g36950Os.4378.4.S1_x_at10/111+20926161..20929106expressed protein
LOC_Os01g36960OsAffx.19542.3.S1_x_at10/111+20939332..20943554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4378.4.S1_x_at--477--2791Chr01:20928414..20928438 (25 bp)
AAGAGGTTCAAGACGCTGCCGGCGT
LOC_Os01g36950
Os.4378.4.S1_x_at--429--4851Chr01:20928356..20928380 (25 bp)
GCTACATCTTCGTCTGCAACAACGA
LOC_Os01g36950
Os.4378.4.S1_x_at--781--9571Chr01:20928169..20928326 (25 bp)
TCTTCGGGCTTCCATCGAGATACAG
LOC_Os01g36950
Os.4378.4.S1_x_at--918--9211Chr01:20927714..20928103 (25 bp)
TCCACGGCATCTTCGAGGCTGCGAG
LOC_Os01g36950
Os.4378.4.S1_x_at--639--911Chr01:20927699..20927723 (25 bp)
AGGCTGCGAGCTTTGGCGGAACAAA
LOC_Os01g36950
Os.4378.4.S1_x_at--80--2471Chr01:20927680..20927704 (25 bp)
AACAAACATCGATCCGACGGCGTGG
LOC_Os01g36950
Os.4378.4.S1_x_at--727--10651NONE
TTCCCTGCACAGGTGAAGGTTGCGA
NONE
Os.4378.4.S1_x_at--703--6191Chr01:20926920..20926944 (25 bp)
GAGGAAGATCTATGACCCGCTGGAG
LOC_Os01g36950
Os.4378.4.S1_x_at--51--1951Chr01:20926861..20926885 (25 bp)
ACGGCCCCAAGTTCAGGCTGGAGCT
LOC_Os01g36950
Os.4378.4.S1_x_at--479--3751Chr01:20926663..20926862 (25 bp)
CTCAGCGTCGCCGAGACAAGGATGA
LOC_Os01g36950
Os.4378.4.S1_x_at--1020--971Chr01:20926645..20926669 (25 bp)
AGGATGACGCCTGAGGCTACTGCTT
LOC_Os01g36950
Target Sequence 
AAGAGGTTCAAGACGCTGCCGGCGTCGGAGGCGCTCCCCCGGGACGAGGCCATCGGCGGCTACATCTTCGTCTGCAACAA
CGACACCATGGAGGAAAACCTCAAGAGGCAGCTCTTCGGGCTTCCATCGAGATACAGGGATTCAGTGAGGGCGATCAGGC
CAGGGCTGCCCCTCTTCCTCTACAACTACTCCACCCACCAGCTCCACGGCATCTTCGAGGCTGCGAGCTTTGGCGGAACA
AACATCGATCCGACGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGGTGAAGGTTGCGACGAG
GAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGC
TCAGCGTCGCCGAGACAAGGATGACGCCTGAGGCTACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4378.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis