Browse Element(s) Details


Os.44163.1.S1_at

Description gb:AK119648.1
DB_XREF= gi:37989271
TID=Os.44163.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0030H06.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-G08, full insert sequence.
FL= gb:AK119648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g311201/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31080Os.14835.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.56036.1.S1_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.1.S1_x_at11/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31080Os.14835.2.S1_at10/112+18569336..18575796hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g31090NANA2+18584406..18585032hypothetical protein
LOC_Os02g31100Os.16026.1.S1_at11/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31100OsAffx.24521.1.S1_at5/112+18586654..18590521LITAF-domain-containing protein, putative, expressed
LOC_Os02g31110OsAffx.12305.1.S1_at10/112+18592697..18595331retrotransposon, putative, centromere-specific
LOC_Os02g31120Os.44163.1.S1_at1/112+18599144..18603219retrotransposon protein, putative, unclassified, expressed
LOC_Os02g31129OsAffx.16980.1.S1_at1/112+18608726..18610430NA
LOC_Os02g31129OsAffx.29429.1.S1_x_at1/112+18608726..18610430NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44163.1.S1_at--348--371Chr07:15257182..15257206 (25 bp)
ATCACTTCCCATCTTGAGGACTTTG
NONE
Os.44163.1.S1_at--916--9191Chr07:15257210..15257234 (25 bp)
TGCCATCTTCTCTAGCAAGGCTGTA
NONE
Os.44163.1.S1_at--399--2634Chr07:15257242..15257266 (25 bp)
AACCTAGTCTTGGTTCTCTTTGAGA
NONE
Os.44163.1.S1_at--873--5611Chr07:15257351..15257375 (25 bp)
GACAAACTAGTCCAAGCTCGCTCTA
NONE
Os.44163.1.S1_at--112--8352Chr07:15257393..15257417 (25 bp)
GGCGGCGCTCTAGCTTATACAAGTT
NONE
Os.44163.1.S1_at--116--7891Chr07:15257529..15257553 (25 bp)
GGTTACGATTTAGGCGATCCCACTT
NONE
Os.44163.1.S1_at--67--9551Chr07:15257553..15257577 (25 bp)
TCTATACCTTTGTTGCCCTAGTGGC
NONE
Os.44163.1.S1_at--975--10331Chr07:15257589..15257613 (25 bp)
TTTAGCGGCGACTGATTCGGTGCTA
NONE
Os.44163.1.S1_at--808--3891Chr07:15257622..15257646 (25 bp)
CTGTGTCTATGTTCTGGAGCTGTCA
NONE
Os.44163.1.S1_at--10--10871Chr07:15257679..15257703 (25 bp)
TTGGATACGATCTTCCACGGTTGTA
NONE
Os.44163.1.S1_at--49--371Chr07:15257727..15257751 (25 bp)
ATCAATATGAACTTCGCGCTGTCCG
NONE
Target Sequence 
ATCACTTCCCATCTTGAGGACTTTGTCGTGCCATCTTCTCTAGCAAGGCTGTAGGGTGAGAACCTAGTCTTGGTTCTCTT
TGAGACCTTGATGGACAGTGGAGGCGGTGCTTCCGTCACTCCTCTCCTTGGAGACATCGTCTAGGCAGCCCCCTTGCCGA
AACCTCCCAGACAAACTAGTCCAAGCTCGCTCTAGACTCATGCCCTCTTGTGGCGGCGCTCTAGCTTATACAAGTTGGCC
ATGTCAGAGGGCTTAGGGGGGAGGGGAGCGGTTCCATTCTTCTCTCGCACCCTCTCTTCCTCAATCCTGAAGATGTGGCT
TGAGTGGAGTTTGGTGTCGGTTGTTAGGGTTACGATTTAGGCGATCCCACTTCTATACCTTTGTTGCCCTAGTGGCGGCC
GGTCACGTTTAGCGGCGACTGATTCGGTGCTAGCCTTCTCCTGTGTCTATGTTCTGGAGCTGTCAGTGTGTGGGTGGTGG
TTATTTTCTTCTTTTTCTTGGATACGATCTTCCACGGTTGTAATCTTGTAATTTTTTCCTGCTCTATCAATATGAACTTC
GCGCTGTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis