Browse Element(s) Details


Os.44172.1.S1_at

Description gb:NM_187025.1
DB_XREF= gi:34901135
GEN=OJ1113_E01.12
TID=Os.44172.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU161031(C53313)~similar to Oryza sativa chromosome 1, OSJNBb0063G05.3~unknown protein (OJ1113_E01.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU161031(C53313)~similar to Oryza sativa chromosome 1, OSJNBb0063G05.3~unknown protein (OJ1113_E01.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3981011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein
LOC_Os07g39780OsAffx.23037.1.S1_x_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39780Os.18065.1.S1_at11/117+23831660..23838407Repeat in ubiquitin-activating protein, expressed
LOC_Os07g39790NANA7+23839491..23840069expressed protein
LOC_Os07g39800Os.38056.1.S1_at10/117+23840877..23843760Transcription repressor HOTR, putative, expressed
LOC_Os07g39810Os.44172.1.S1_at11/117+23849890..23850754lipase class 3 family protein, putative, expressed
LOC_Os07g39820Os.44171.1.S1_at11/117+23867114..23869405short-root transcription factor, putative, expressed
LOC_Os07g39820OsAffx.25332.1.S1_x_at1/117+23867114..23869405short-root transcription factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44172.1.S1_at--34--7211Chr07:23850438..23850462 (25 bp)
GTCGACGAGAGGGACGGCTCCGTGT
LOC_Os07g39810
Os.44172.1.S1_at--910--8791Chr07:23850416..23850440 (25 bp)
TGTTCGGCGCCATCTTCGAGCGGGA
LOC_Os07g39810
Os.44172.1.S1_at--806--9451Chr07:23850413..23850437 (25 bp)
TCGGCGCCATCTTCGAGCGGGACCA
LOC_Os07g39810
Os.44172.1.S1_at--537--3491Chr07:23850228..23850252 (25 bp)
CAGGCGCTCAGGGCGACCATCGAGA
LOC_Os07g39810
Os.44172.1.S1_at--490--1711Chr07:23850213..23850237 (25 bp)
ACCATCGAGAGGTTCGGGTCGGAGA
LOC_Os07g39810
Os.44172.1.S1_at--97--9451Chr07:23850195..23850219 (25 bp)
TCGGAGAACGTCTGCCTCTGCGGCC
LOC_Os07g39810
Os.44172.1.S1_at--672--5971Chr07:23850192..23850216 (25 bp)
GAGAACGTCTGCCTCTGCGGCCACT
LOC_Os07g39810
Os.44172.1.S1_at--938--771Chr07:23850027..23850051 (25 bp)
ATGGGCGTCAGGAGCGTCGTCAAGA
LOC_Os07g39810
Os.44172.1.S1_at--169--7091Chr07:23850009..23850033 (25 bp)
GTCAAGACGGCCGACTGCCTGCTCA
LOC_Os07g39810
Os.44172.1.S1_at--333--2951Chr07:23849940..23849964 (25 bp)
AAGGCGCTCAAGAACGTGGCCTACG
LOC_Os07g39810
Os.44172.1.S1_at--728--5451Chr07:23849929..23849953 (25 bp)
GAACGTGGCCTACGCCAACTGCATC
LOC_Os07g39810
Target Sequence 
GTCGACGAGAGGGACGGCTCCGTGTTCGGCGCCATCTTCGAGCGGGACCACCAGCCGGCGGCCGCGGTCGACGGCGAGGC
GCCGCGGGCGGTGATCGCGTTCCGCGGCACGCTGCTGCGGGGGCCGACCATCCGGCGCGACGTCGAGGACGAGCTCCGCC
TGCTGGCGCGCAACAGCCTCCGCGGCTCGGCGCGGCTCGCCGGCGCGCTCCAGGCGCTCAGGGCGACCATCGAGAGGTTC
GGGTCGGAGAACGTCTGCCTCTGCGGCCACTCCCTCGGCGCCGGCTTCGCCCGCCAGGTCGCCAGGATGCTCGCCTCCTC
CTCCTCGCCGCCGTCGCCGCGCCACCACCACCACGCCGCCGCGGCGTCGCTCGAGTTCCACCTCTTCAACGCGCCCTACC
TGTCGCTGCCCATGGGCGTCAGGAGCGTCGTCAAGACGGCCGACTGCCTGCTCAAGGCGGTGCGCACCGGCGTCGCCGCC
GTCGGCCGGTGGCACGGCAAGGCGCTCAAGAACGTGGCCTACGCCAACTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis