Browse Element(s) Details


Os.45901.1.S1_x_at

Description gb:NM_193270.1
DB_XREF= gi:34913623
GEN=B1166B08.9
TID=Os.45901.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1166B08.9 (B1166B08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1166B08.9 (B1166B08.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g278402/11Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os01g553501/11Phosphoenolpyruvate carboxylase, housekeeping isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27810OsAffx.29386.2.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_x_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27810OsAffx.29386.1.S1_at11/118+16806753..16808943Calcium binding EGF domain containing protein, expressed
LOC_Os08g27824Os.21286.1.S1_at11/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_x_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27824Os.21286.2.S1_at10/118+16813642..16827150NOL1/NOP2/sun family protein, putative, expressed
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45901.1.S1_x_at--739--4831Chr01:20019901..20019925 (25 bp)
GCTAACTTGGCTGAGGAGGTCCAGA
NONE
Os.45901.1.S1_x_at--490--2073Chr01:20019905..20019929 (25 bp)
ACTTGGCTGAGGAGGTCCAGATTGC
NONE
Os.45901.1.S1_x_at--417--8492Chr01:20019908..20019932 (25 bp)
TGGCTGAGGAGGTCCAGATTGCATA
NONE
Os.45901.1.S1_x_at--643--6171Chr01:20019913..20019937 (25 bp)
GAGGAGGTCCAGATTGCATACTGGA
NONE
Os.45901.1.S1_x_at--492--6591Chr01:20019924..20019948 (25 bp)
GATTGCATACTGGAGGAGAATAAAT
NONE
Os.45901.1.S1_x_at--388--10731Chr01:20019926..20019950 (25 bp)
TTGCATACTGGAGGAGAATAAATCT
NONE
Os.45901.1.S1_x_at--616--5211Chr01:20019941..20020326 (25 bp)
GAATAAATCTCAAGAAAGCCCTTAA
NONE
Os.45901.1.S1_x_at--365--3031Chr01:20019946..20020331 (25 bp)
AATCTCAAGAAAGCCCTTAAGAGGT
NONE
Os.45901.1.S1_x_at--64--3111Chr01:20019951..20020336 (25 bp)
CAAGAAAGCCCTTAAGAGGTTTGCT
NONE
Os.45901.1.S1_x_at--1079--10691Chr01:20020332..20020356 (25 bp)
TTGCTGTTGACCTGAAGAAATCACC
NONE
Os.45901.1.S1_x_at--776--8791Chr01:20020336..20020360 (25 bp)
TGTTGACCTGAAGAAATCACCAGTA
NONE
Target Sequence 
GCTAACTTGGCTGAGGAGGTCCAGATTGCATACTGGAGGAGAATAAATCTCAAGAAAGCCCTTAAGAGGTTTGCTGTTGA
CCTGAAGAAATCACCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45901.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis