Browse Element(s) Details


Os.45902.1.A1_at

Description gb:CB676441
DB_XREF= gi:29680166
DB_XREF=OSJNEe12L07.r
CLONE=OSJNEe12L07
TID=Os.45902.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.45902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683B11.20 (P0683B11.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1743010/11NB-ARC domain containing protein, expressed
LOC_Os07g299206/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17400NANA12+9971351..9971878hypothetical protein
LOC_Os12g17410NANA12+9977964..9982060NB-ARC domain containing protein
LOC_Os12g17420NANA12+9983692..9985325disease resistance protein RPM1 homolog, putative
LOC_Os12g17430Os.45902.1.A1_x_at11/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.45902.1.A1_at10/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.27538.1.S1_at9/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.10222.1.S1_x_at2/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.51841.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430OsAffx.727.1.S1_x_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17430Os.56372.1.S1_at1/1112+9989310..9993456NB-ARC domain containing protein, expressed
LOC_Os12g17440OsAffx.19717.1.S1_at11/1112+9996211..9996546hypothetical protein
LOC_Os12g17450OsAffx.435.1.S1_at1/1112+9997186..10001032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17460NANA12+10001210..10002253retrotransposon protein, putative, unclassified
LOC_Os12g17470OsAffx.31777.2.S1_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.31777.2.S1_x_at11/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.1.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17470OsAffx.25156.5.S1_x_at1/1112+10003566..10006282Transposable element protein, putative, Transposase_28
LOC_Os12g17480NANA12+10007910..10011703NB-ARC domain containing protein
LOC_Os12g17490Os.52152.1.S1_at5/1112+10014595..10018771NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45902.1.A1_at--690--10293Chr12:9991790..9991814 (25 bp)
TTTCGTGATTATGACTTCTAGGTGG
LOC_Os12g17430
Os.45902.1.A1_at--643--10611Chr12:9991789..9991813 (25 bp)
TTCGTGATTATGACTTCTAGGTGGA
LOC_Os12g17430
Os.45902.1.A1_at--75--9432Chr12:9991788..9991812 (25 bp)
TCGTGATTATGACTTCTAGGTGGAT
LOC_Os12g17430
Os.45902.1.A1_at--761--3992Chr12:9991787..9991811 (25 bp)
CGTGATTATGACTTCTAGGTGGATA
LOC_Os12g17430
Os.45902.1.A1_at--276--7413Chr12:9991786..9991810 (25 bp)
GTGATTATGACTTCTAGGTGGATAC
LOC_Os12g17430
Os.45902.1.A1_at--298--8832Chr12:9991785..9991809 (25 bp)
TGATTATGACTTCTAGGTGGATACT
LOC_Os12g17430
Os.45902.1.A1_at--536--6552Chr12:9991784..9991808 (25 bp)
GATTATGACTTCTAGGTGGATACTA
LOC_Os12g17430
Os.45902.1.A1_at--618--153Chr12:9991783..9991807 (25 bp)
ATTATGACTTCTAGGTGGATACTAT
LOC_Os12g17430
Os.45902.1.A1_at--801--5672Chr12:9991778..9991802 (25 bp)
GACTTCTAGGTGGATACTATACGTA
LOC_Os12g17430
Os.45902.1.A1_at--368--2033Chr12:9991777..9991801 (25 bp)
ACTTCTAGGTGGATACTATACGTAT
LOC_Os12g17430
Target Sequence 
TTTCGTGATTATGACTTCTAGGTGGATACTATACGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45902.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis