Browse Element(s) Details


Os.45903.1.S1_at

Description gb:NM_184956.1
DB_XREF= gi:34896997
GEN=OSJNBb0042N11.13
TID=Os.45903.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45903 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0042N11.13), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3982011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein
LOC_Os03g39840Os.41695.4.S1_x_at11/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39840Os.41695.15.S1_s_at2/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39850OsAffx.13256.1.S1_at11/113+22114876..22116121Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g39860Os.37594.2.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.2.S1_x_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.1.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39870NANA3+22126936..22127262hypothetical protein
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45903.1.S1_at--210--6351Chr03:22103917..22103941 (25 bp)
GATGCTGATGGATTTGTTATTCCTA
LOC_Os03g39820
Os.45903.1.S1_at--774--6791Chr03:22103932..22103956 (25 bp)
GTTATTCCTAATTTGACCACTCAAG
LOC_Os03g39820
Os.45903.1.S1_at--457--5831Chr03:22103946..22103970 (25 bp)
GACCACTCAAGAAGATGACGTTACT
LOC_Os03g39820
Os.45903.1.S1_at--141--10471Chr03:22103966..22103990 (25 bp)
TTACTGAGCATACTGCCCCTAAACC
LOC_Os03g39820
Os.45903.1.S1_at--113--4511Chr03:22104220..22104244 (25 bp)
GCCGTAAGCAGCGATTCAGAAACAA
LOC_Os03g39820
Os.45903.1.S1_at--1135--2451Chr03:22104261..22104285 (25 bp)
AACAAATTCACTGGCAATGCTCAGG
LOC_Os03g39820
Os.45903.1.S1_at--687--2611Chr03:22104299..22104323 (25 bp)
AACCCTGAGGGAGCTCATGGGAGCT
LOC_Os03g39820
Os.45903.1.S1_at--947--1551Chr03:22104310..22104334 (25 bp)
AGCTCATGGGAGCTAGAACACATAG
LOC_Os03g39820
Os.45903.1.S1_at--996--10011Chr03:22104323..22104347 (25 bp)
TAGAACACATAGCAAGGGCGTGCCA
LOC_Os03g39820
Os.45903.1.S1_at--880--2331Chr03:22104347..22104371 (25 bp)
AAAGAGCTCTCCTCGTGATTGGCTT
LOC_Os03g39820
Os.45903.1.S1_at--274--1591Chr03:22104351..22104375 (25 bp)
AGCTCTCCTCGTGATTGGCTTGATC
LOC_Os03g39820
Target Sequence 
GATGCTGATGGATTTGTTATTCCTAATTTGACCACTCAAGAAGATGACGTTACTGAGCATACTGCCCCTAAACCTAANGG
ATCCTGAACCTCTGAAGGNAGAAAGAGGAGAAGATATACTTNGGGACCTCATGGCGNTCNACCATCTCAAGCAAAGCAGC
AGGAGATCAACATAGTTNGCCGTAAGCAGCGATTCAGAAACAAGCTGAAGGAAGCAGATAACAAATTCACTGGCAATGCT
CAGGAGAACAAGGTGGAAACCCTGAGGGAGCTCATGGGAGCTAGAACACATAGCAAGGGCGTGCCAAAGAGCTCTCCTCG
TGATTGGCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis