Browse Element(s) Details


Os.45911.1.S1_at

Description gb:NM_185948.1
DB_XREF= gi:34898981
GEN=P0427D10.28
TID=Os.45911.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU096098(S12159)~putative RNA-directed DNA polymerase (P0427D10.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU096098(S12159)~putative RNA-directed DNA polymerase (P0427D10.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4553011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45480OsAffx.28918.5.S1_x_at11/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.7.S1_x_at3/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.28918.2.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45480OsAffx.22536.1.S1_x_at1/117+27130716..27136152hypothetical protein
LOC_Os07g45490OsAffx.28918.7.S1_x_at11/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.28918.5.S1_x_at3/117+27139551..27145247expressed protein
LOC_Os07g45490OsAffx.22536.1.S1_x_at1/117+27139551..27145247expressed protein
LOC_Os07g45510OsAffx.22536.1.S1_x_at11/117+27148571..27152621hypothetical protein
LOC_Os07g45510OsAffx.28918.7.S1_x_at2/117+27148571..27152621hypothetical protein
LOC_Os07g45520OsAffx.28919.1.S1_at11/117+27153254..27153906hypothetical protein
LOC_Os07g45520Os.20299.4.S1_x_at1/117+27153254..27153906hypothetical protein
LOC_Os07g45530OsAffx.1528.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530OsAffx.22535.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45530Os.45911.1.S1_at11/117+27156397..27163143retrotransposon protein, putative, unclassified
LOC_Os07g45540OsAffx.16728.1.S1_at3/117+27164172..27164904hypothetical protein
LOC_Os07g45550Os.32803.2.S1_at11/117+27170516..27173834hypothetical protein
LOC_Os07g45560Os.31644.3.S1_at11/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.5.S1_x_at1/117+27177191..27187989expressed protein
LOC_Os07g45560OsAffx.28918.7.S1_x_at1/117+27177191..27187989expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45911.1.S1_at--824--2071Chr07:27157031..27157055 (25 bp)
ACATTCGAGGGAGTTTCTCTGCGCT
LOC_Os07g45530
Os.45911.1.S1_at--913--4552Chr04:30598276..30598300 (25 bp)
GCGCTGGCCTTATCGGAATATTTTC
NONE
Os.45911.1.S1_at--318--991Chr07:27156950..27156974 (25 bp)
AGGATGCCCAAGACTCTACCAGTTG
LOC_Os07g45530
Os.45911.1.S1_at--894--1231Chr07:27156930..27156954 (25 bp)
AGTTGGAAGCTCACTCCTAACAGAG
LOC_Os07g45530
Os.45911.1.S1_at--114--1352Chr04:30598379..30598402 (24 bp)
AGAGTTTTCTGCACAGCCTCTGTGT
NONE
Os.45911.1.S1_at--184--8772Chr04:30598400..30598424 (25 bp)
TGTATGAGATGTTCTTCGCGGCACG
NONE
Os.45911.1.S1_at--468--7712Chr04:30598424..30598448 (25 bp)
GGGTGCGATCTCAATGTGCGGAATT
NONE
Os.45911.1.S1_at--185--4532Chr04:30598466..30598490 (25 bp)
GCCCGTCTAGACTTAAGTTCTTCAT
NONE
Os.45911.1.S1_at--424--6632Chr04:30598562..30598586 (25 bp)
GTTGTGTCCTTTGCAATGGCGATCA
NONE
Os.45911.1.S1_at--498--3831Chr07:27156694..27156718 (25 bp)
CTGCGATCATTTGTTGCTGGGTTGC
LOC_Os07g45530
Os.45911.1.S1_at--570--3891Chr07:27156678..27156702 (25 bp)
CTGGGTTGCCCTTTCACTAATAGGA
LOC_Os07g45530
Target Sequence 
ACATTCGAGGGAGTTTCTCTGCGCTGGCCTTATCGGAATATTTTCGTTTGTGGGATGAGATTCAGGAGGTACAGCTGCAA
GAGGATGCCCAAGACTCTACCAGTTGGAAGCTCACTCCTAACAGAGTTTTCTGCACAGCCTCTGTGTATGAGATGTTCTT
CGCGGCACGGGTGCGATCTCAATGTGCGGAATTGATCTGGCAAGCTAGGGGCCCGTCTAGACTTAAGTTCTTCATGTGGC
TAATCACCAAGGGCAGGTGCTTGACGGCAGACAATTTGCAAAAAAGAGGATGGCCGCATGAAGATGGTTGTGTCCTTTGC
AATGGCGATCAGGAGAGCTGCGATCATTTGTTGCTGGGTTGCCCTTTCACTAATAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis