Browse Element(s) Details


Os.45912.1.S1_at

Description gb:NM_192315.1
DB_XREF= gi:34911713
GEN=P0707D10.21
TID=Os.45912.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.21 (P0707D10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0707D10.21 (P0707D10.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g457704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45912.1.S1_at--69--9211Chr01:26327641..26327665 (25 bp)
TCCACGTGGACAACCGCAAGGACGT
LOC_Os01g45770
Os.45912.1.S1_at--891--2611Chr01:26327630..26327654 (25 bp)
AACCGCAAGGACGTACGGCGATTCT
LOC_Os01g45770
Os.45912.1.S1_at--1095--951Chr01:26327623..26327647 (25 bp)
AGGACGTACGGCGATTCTGCAGGCC
LOC_Os01g45770
Os.45912.1.S1_at--571--6991Chr01:26327618..26327642 (25 bp)
GTACGGCGATTCTGCAGGCCGCCGA
LOC_Os01g45770
Os.45912.1.S1_at--619--7311NONE
GTGCTGCAAGAGCTTTCATCGTCGG
NONE
Os.45912.1.S1_at--377--2771Chr01:26324843..26324866 (24 bp)
AAGAGCTTTCATCGTCGGCTCGCCG
NONE
Os.45912.1.S1_at--919--1591Chr01:26324813..26324837 (25 bp)
AGCTGTCATCGGTGCCTCTAACGTT
NONE
Os.45912.1.S1_at--749--9611Chr01:26324808..26324832 (25 bp)
TCATCGGTGCCTCTAACGTTCGACT
NONE
Os.45912.1.S1_at--1159--9511Chr01:26324797..26324821 (25 bp)
TCTAACGTTCGACTCCTCGCTGTAG
NONE
Os.45912.1.S1_at--321--4011Chr01:26324763..26324787 (25 bp)
CGTCAACGTCGCCAAATGCGAGGGC
NONE
Os.45912.1.S1_at--35--2291Chr01:26324750..26324774 (25 bp)
AAATGCGAGGGCTGCTCTCCCGCTG
NONE
Target Sequence 
TCCACGTGGACAACCGCAAGGACGTACGGCGATTCTGCAGGCCGCCGACCGCTGTACTACAACCGCGTCGTGGTCGGCCG
ATGGGGTGAGGTGCCGGCCTTCTGCGTGGACAAGTTGTCAGCGGTCGACCTGAACGTCGCCATGTCGCGAGAAGGCGTGT
CCCTGCCTCAGCGGCTGCGTGAAGCCATGGCTGTCGACATGCACGTCGGGGAACTGGAGTTGGCGGTTGAGATGAAGCCA
GCACGTCCGGAGGATGTCTCCCGGGCGTGCTTCCACTCGTGTGCTGCAAGAGCTTTCATCGTCGGCTCGCCGCCCTCAGC
TGTCATCGGTGCCTCTAACGTTCGACTCCTCGCTGTAGCCCCCAAGCCGTCAACGTCGCCAAATGCGAGGGCTGCTCTCC
CGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis