Browse Element(s) Details


Os.45916.1.S1_s_at

Description gb:AU082531
DB_XREF= gi:6984555
DB_XREF=AU082531
CLONE=E30839
TID=Os.45916.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g148509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein
LOC_Os01g14860Os.9955.1.S1_a_at11/111+8326506..8330779Glycogen synthase kinase-3 homolog MsK-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45916.1.S1_s_at--669--3571Chr01:8302774..8302798 (25 bp)
CATATGTGCAGTTAGCTTGCACTGT
LOC_Os01g14850
Os.45916.1.S1_s_at--722--271Chr01:8302773..8302797 (25 bp)
ATATGTGCAGTTAGCTTGCACTGTG
LOC_Os01g14850
Os.45916.1.S1_s_at--759--10111Chr01:8302772..8302796 (25 bp)
TATGTGCAGTTAGCTTGCACTGTGT
LOC_Os01g14850
Os.45916.1.S1_s_at--1031--3691Chr01:8302675..8302699 (25 bp)
CTATCTGTTTGTTGGTTGGTTGTGT
LOC_Os01g14850
Os.45916.1.S1_s_at--376--10151Chr01:8302674..8302698 (25 bp)
TATCTGTTTGTTGGTTGGTTGTGTT
LOC_Os01g14850
Os.45916.1.S1_s_at--97--491Chr01:8302673..8302697 (25 bp)
ATCTGTTTGTTGGTTGGTTGTGTTT
LOC_Os01g14850
Os.45916.1.S1_s_at--1152--9451Chr01:8302672..8302696 (25 bp)
TCTGTTTGTTGGTTGGTTGTGTTTG
LOC_Os01g14850
Os.45916.1.S1_s_at--899--3871Chr01:8302671..8302695 (25 bp)
CTGTTTGTTGGTTGGTTGTGTTTGT
LOC_Os01g14850
Os.45916.1.S1_s_at--492--9731Chr01:8302640..8302664 (25 bp)
TAATTAGGTCCCTTCTTATATTTTG
LOC_Os01g14850
Target Sequence 
CATATGTGCAGTTAGCTTGCACTGTGTCTAGCTAGCGTTCTATTATGANGTAGTGTCTCTTCTATCTCTTTTCTTTACAT
GCATTTGGAGGAGGATTATTCTATCTGTTTGTTGGTTGGTTGTGTTTGTTTGTTTTAATTAGGTCCCTTCTTATATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45916.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis