Browse Element(s) Details


Os.45952.1.S1_at

Description gb:CR293246
DB_XREF= gi:44679812
DB_XREF=CR293246
CLONE=p883d07p3
TID=Os.45952.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456F08.15 (P0456F08.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5133011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51300Os.12711.1.S1_at11/111+29827969..29833800WD-40 repeat protein MSI4, putative, expressed
LOC_Os01g51310OsAffx.23744.1.S1_s_at11/111+29835190..29836268expressed protein
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os01g51390Os.4124.1.S1_a_at11/111+29871535..29875363Insulinase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45952.1.S1_at--642--331Chr01:29848933..29848957 (25 bp)
ATACATGGCTACGACAGTGTTTCTC
LOC_Os01g51330
Os.45952.1.S1_at--1026--3051Chr01:29848877..29848901 (25 bp)
AATACGAAATGTTGGTGGCACTGTC
LOC_Os01g51330
Os.45952.1.S1_at--584--2291Chr01:29848871..29848895 (25 bp)
AAATGTTGGTGGCACTGTCCATAAT
LOC_Os01g51330
Os.45952.1.S1_at--1050--6251Chr01:29848768..29848792 (25 bp)
GATGGGACTCCCTGATAGTAATAAC
LOC_Os01g51330
Os.45952.1.S1_at--206--3673Chr01:29848654..29848678 (25 bp)
CTCTTTAGAAATAGGGCACTTTAAG
LOC_Os01g51330
Os.45952.1.S1_at--196--2771Chr01:29848613..29848637 (25 bp)
AAGACCTTTTAGATTCAGATGTGTA
LOC_Os01g51330
Os.45952.1.S1_at--370--6571Chr01:29848602..29848626 (25 bp)
GATTCAGATGTGTATTTCTTAGAAC
LOC_Os01g51330
Os.45952.1.S1_at--446--6771Chr01:29848573..29848597 (25 bp)
GTTAACAGTGGCGTAGCTAGCTTAT
LOC_Os01g51330
Os.45952.1.S1_at--495--10112Chr11:4886078..4886102 (25 bp)
TATGGGCACAGGACTACCCTAGATT
NONE
Os.45952.1.S1_at--258--8131Chr01:29848532..29848556 (25 bp)
GGACTACCCTAGATTTTAGCATAGA
LOC_Os01g51330
Os.45952.1.S1_at--508--1353Chr02:28780473..28780497 (25 bp)
AGAGACCTTAATCCCTACTATCAAA
NONE
Target Sequence 
ATACATGGCTACGACAGTGTTTCTCTACATTTTTGNCATGGNTACTGCTATCAAGGAATACGAAATGTTGGTGGCACTGT
CCATAATTGTAGTCATGCAGCCCTTCTTCATATTGATGTGGATTGCAGCACCATTCCTTAGGACTGTAGCAATTGTGAAA
TATGCGATGGGACTCCCTGATAGTAATAACGTCAACAGAATTACAACAGGAAGGATGTCAGCCCTAGCCTGAACAAAGTA
TGCCTAAGAAGGGTTGNTCAAGTTTATCATAATTGTGCCCTCTTTAGAAATAGGGCACTTTAAGNTGCTGTCTTCTTTAG
AAGACCTTTTAGATTCAGATGTGTATTTCTTAGAACATATGTTAACAGTGGCGTAGCTAGCTTATAGNTCCATATGGGCA
CAGGACTACCCTAGATTTTAGCATAGAGACCTTAATCCCTACTATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis