Browse Element(s) Details


Os.45953.1.S1_at

Description gb:NM_192974.1
DB_XREF= gi:34913031
GEN=P0013G02.6
TID=Os.45953.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45953 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (P0013G02.6), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g396005/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39570NANA1+22643104..22648558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39580Os.57500.1.S1_x_at3/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.57500.1.S1_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580OsAffx.940.1.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39580Os.51127.2.S1_x_at1/111+22648916..22654218Anthocyanin regulatory Lc protein, putative
LOC_Os01g39590OsAffx.23582.1.S1_x_at11/111+22659374..22660089hypothetical protein
LOC_Os01g39600Os.45953.1.S1_at5/111+22665028..22668325Leucine Rich Repeat family protein, expressed
LOC_Os01g39620OsAffx.23583.1.S1_at11/111+22677947..22678461hypothetical protein
LOC_Os01g39630Os.35175.1.S1_at10/111+22680274..22685252DNA repair protein RAD51 homolog 3, putative, expressed
LOC_Os01g39640OsAffx.21318.2.S1_at11/111+22687743..22689153hypothetical protein
LOC_Os01g39640OsAffx.21318.1.S1_at6/111+22687743..22689153hypothetical protein
LOC_Os01g39650OsAffx.23584.2.S1_at10/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_x_at9/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein
LOC_Os01g39650OsAffx.23584.1.S1_at7/111+22692354..22696241Programmed cell death protein 2, C-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45953.1.S1_at--345--2351Chr01:22665306..22665330 (25 bp)
AAAGCGAGCGCTGCCATGGGATACC
LOC_Os01g39600
Os.45953.1.S1_at--748--2811Chr01:22665186..22665210 (25 bp)
AAGATTATGCAGCTGCCCCTTGAGT
LOC_Os01g39600
Os.45953.1.S1_at--773--2791Chr01:22665127..22665151 (25 bp)
AAGAGGATGTTACTCGGCAGCTGAA
LOC_Os01g39600
Os.45953.1.S1_at--335--531Chr01:22665084..22665108 (25 bp)
ATCGCATCAGCCTGCACCAGTGAAA
LOC_Os01g39600
Os.45953.1.S1_at--135--1251Chr01:22665032..22665056 (25 bp)
AGTTGATCCAAGAACTGTGCACCTT
LOC_Os01g39600
Os.45953.1.S1_at--115--8691Chr01:22664985..22665009 (25 bp)
TGTAACTGTTCCCACGAGTCACATG
NONE
Os.45953.1.S1_at--666--6091Chr01:22664970..22664994 (25 bp)
GAGTCACATGCCTTGACAGTGCCAT
NONE
Os.45953.1.S1_at--1099--7271Chr01:22664952..22664976 (25 bp)
GTGCCATGAGAATTTGTAACCTACC
NONE
Os.45953.1.S1_at--576--3331Chr01:22664910..22664934 (25 bp)
CACTGATCTTAGAAGCACATCCGAT
NONE
Os.45953.1.S1_at--1154--2091Chr01:22664894..22664918 (25 bp)
ACATCCGATCGAGGTGCCAACGAAT
NONE
Os.45953.1.S1_at--1029--8491Chr01:22664866..22664890 (25 bp)
TGACCTACCTAGGATCCTGAACATC
NONE
Target Sequence 
AAAGCGAGCGCTGCCATGGGATACCTCGCCCCNGAGTACACTACCACNGGCCGGTTCTCGGAGAAGAGTGATGTTTATGC
ATTTGGGGTAATCGTATTTCAGATACTGACCGGTAAAAGCAAGATTATGCAGCTGCCCCTTGAGTCCAGCAACGACGAGG
ATCTCATCGACGGTAACCTAAGAGGATGTTACTCGGCAGCTGAAGCAGCTAAGCTGGCGAAGATCGCATCAGCCTGCACC
AGTGAAAATCCAGANCATAGACCTACAATGGAAGAGTTGATCCAAGAACTGTGCACCTTNNNNATCATGGGCCTCATCCA
CCTGTAACTGTTCCCACGAGTCACATGCCTTGACAGTGCCATGAGAATTTGTAACCTACCTACCTAGGATCACTAATCAC
TGATCTTAGAAGCACATCCGATCGAGGTGCCAACGAATTAATGACCTACCTAGGATCCTGAACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis