Browse Element(s) Details


Os.45991.1.S1_x_at

Description gb:CB663972
DB_XREF= gi:29667697
DB_XREF=OSJNEd09H02.r
CLONE=OSJNEd09H02
TID=Os.45991.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1015E06.17 (B1015E06.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1044011/11glycosyltransferase family 14 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10410Os.55650.1.A1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.22143.1.S1_at6/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410OsAffx.21756.5.A1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10410Os.7307.3.S1_x_at1/111+5482366..5484912transposon protein, putative, unclassified
LOC_Os01g10420OsAffx.22143.2.S1_at11/111+5487425..5488162hypothetical protein
LOC_Os01g10430Os.27867.1.S1_at11/111+5490191..5496183Cell division-related protein, putative, expressed
LOC_Os01g10440Os.45991.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440Os.18296.1.S1_x_at11/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10440OsAffx.13408.1.S1_x_at1/111+5504434..5506321glycosyltransferase family 14 protein, putative, expressed
LOC_Os01g10450Os.7304.1.S1_at11/111+5507324..5511272protein kinase, putative, expressed
LOC_Os01g10460OsAffx.10996.1.A1_at11/111+5527299..5530411expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45991.1.S1_x_at--807--4571Chr01:5505968..5505992 (25 bp)
GCGCGGCTGGACAAGCTCATGGACA
LOC_Os01g10440
Os.45991.1.S1_x_at--1--4151Chr01:5505969..5505993 (25 bp)
CGCGGCTGGACAAGCTCATGGACAG
LOC_Os01g10440
Os.45991.1.S1_x_at--241--8351Chr01:5505972..5505996 (25 bp)
GGCTGGACAAGCTCATGGACAGGAT
LOC_Os01g10440
Os.45991.1.S1_x_at--191--8531Chr01:5505975..5505999 (25 bp)
TGGACAAGCTCATGGACAGGATCGT
LOC_Os01g10440
Os.45991.1.S1_x_at--481--5611Chr01:5505977..5506001 (25 bp)
GACAAGCTCATGGACAGGATCGTCA
LOC_Os01g10440
Os.45991.1.S1_x_at--741--2211Chr01:5505978..5506002 (25 bp)
ACAAGCTCATGGACAGGATCGTCAG
LOC_Os01g10440
Os.45991.1.S1_x_at--991--3231Chr01:5505979..5506003 (25 bp)
CAAGCTCATGGACAGGATCGTCAGG
LOC_Os01g10440
Os.45991.1.S1_x_at--445--511Chr01:5505995..5506019 (25 bp)
ATCGTCAGGTCGGAGGCCTTCGTCA
LOC_Os01g10440
Os.45991.1.S1_x_at--266--6471Chr01:5506076..5506100 (25 bp)
GATAAATCACTCACTGGTTAATCTT
LOC_Os01g10440
Os.45991.1.S1_x_at--615--7891Chr01:5506091..5506115 (25 bp)
GGTTAATCTTAATCTGCATCGTGTA
LOC_Os01g10440
Os.45991.1.S1_x_at--1069--4971Chr01:5506106..5506130 (25 bp)
GCATCGTGTAATTCGCTTCTTTTTT
LOC_Os01g10440
Target Sequence 
GCGCGGCTGGACAAGCTCATGGACAGGATCGTCAGGTCGGAGGCCTTCGTCANCANCCAGTGCAAGTAGNTAAGCTAGCT
TAGCTTAGCTGCGAGAGTGATCGAGTGAGATAAATCACTCACTGGTTAATCTTAATCTGCATCGTGTAATTCGCTTCTTT
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45991.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis