Browse Element(s) Details


Os.45998.1.S1_x_at

Description gb:NM_187621.1
DB_XREF= gi:34902327
GEN=OJ1626B05.8
TID=Os.45998.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45998 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative glycosyl hydrolase (OJ1626B05.8), mRNA.
PROD=Putative glycosyl hydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1262011/11Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45998.1.S1_x_at--1016--7831Chr03:6686383..6686407 (25 bp)
GGTACAGCGGCGTGGACATCGTCAT
LOC_Os03g12620
Os.45998.1.S1_x_at--664--4411Chr03:6686297..6686321 (25 bp)
GCCAGGGCGTACAACGGCAACCTCG
LOC_Os03g12620
Os.45998.1.S1_x_at--614--3951Chr03:6686240..6686264 (25 bp)
CGGACGCCAGGCAAATCGGTGGACA
LOC_Os03g12620
Os.45998.1.S1_x_at--335--2171Chr03:6686228..6686252 (25 bp)
AAATCGGTGGACACGTACCTCTTCG
LOC_Os03g12620
Os.45998.1.S1_x_at--773--6151Chr03:6686161..6686185 (25 bp)
GGTCGTTCGGCCTCTACCGGACTGA
LOC_Os03g12620
Os.45998.1.S1_x_at--60--8131Chr03:6686143..6686167 (25 bp)
GGACTGACCTCACGGCGAACTACGA
LOC_Os03g12620
Os.45998.1.S1_x_at--1009--1931Chr03:6686132..6686156 (25 bp)
ACGGCGAACTACGACATCGGGCTCG
LOC_Os03g12620
Os.45998.1.S1_x_at--140--4031Chr03:6686079..6686100 (22 bp)
CGTTACTCCAGTTACGGTGCAGAAC
LOC_Os03g12620
Os.45998.1.S1_x_at--988--3431Chr03:6685965..6686092 (25 bp)
CAGTTACGGTGCAGAACACGCCGCA
LOC_Os03g12620
Os.45998.1.S1_x_at--680--1431Chr03:6685953..6685977 (25 bp)
AGAACACGCCGCAGCCGAGCAGAGG
LOC_Os03g12620
Os.45998.1.S1_x_at--890--1031Chr03:6685866..6685890 (25 bp)
AGGTGCCGCAGACCAGCTCGTGCTA
LOC_Os03g12620
Target Sequence 
GGTACAGCGGCGTGGACATCGTCATCGCCGAGACCGGGTGGCCGTACAAGGGCGACGCCGACGAGGGCGGCGCCACGGTG
GACAACGCCAGGGCGTACAACGGCAACCTCGTCGCGCACCTCAAGTCGCAGGTCGGCACGCCGCGGACGCCAGGCAAATC
GGTGGACACGTACCTCTTCGCGCTCTACGACGAGGACCTCAAGGGTGGGCCGGAGTCCGAGCGGTCGTTCGGCCTCTACC
GGACTGACCTCACGGCGAACTACGACATCGGGCTCGCCGCCGCTCCCGGCACGGCGGCTCCGGCCACCGTTACTCCAGTT
ACGGTGCAGAACACGCCGCAGCCGAGCAGAGGGATGACGCCGACGGGGTACTGTGTGACGGCGGCCGGCGTGCCGGGGAC
GACGCAGGGGCAGCAGGTGCCGCAGACCAGCTCGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45998.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis