Browse Element(s) Details


Os.46014.1.S1_s_at

Description gb:BX898462
DB_XREF= gi:40487434
DB_XREF=BX898462
CLONE=y679c11p3
TID=Os.46014.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46014 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568877.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0215010/11expressed protein
LOC_Os11g022005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02100Os.39076.1.A1_s_at11/1112+631454..637030expressed protein
LOC_Os12g02100Os.52675.1.S1_at11/1112+631454..637030expressed protein
LOC_Os12g02110OsAffx.19452.1.S1_x_at11/1112+637470..638114hypothetical protein
LOC_Os12g02120Os.5998.1.S1_at10/1112+638746..642600Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g02130Os.35188.1.S1_at10/1112+644370..650343expressed protein
LOC_Os12g02140NANA12+652258..652560hypothetical protein
LOC_Os12g02150Os.46014.1.S1_s_at10/1112+655105..657392expressed protein
LOC_Os12g02150OsAffx.18634.1.S1_at3/1112+655105..657392expressed protein
LOC_Os12g02160OsAffx.31551.2.S1_s_at11/1112+657672..658919hypothetical protein
LOC_Os12g02160OsAffx.31551.1.S1_at10/1112+657672..658919hypothetical protein
LOC_Os12g02170OsAffx.30780.1.S1_at11/1112+662016..663215hypothetical protein
LOC_Os12g02180OsAffx.19454.1.S1_at4/1112+673082..675628hypothetical protein
LOC_Os12g02200Os.1310.1.S1_a_at11/1112+678079..681269CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46014.1.S1_s_at--706--9231NONE
TCCATTCCAAGGTTGGGTCGGCTTT
NONE
Os.46014.1.S1_s_at--509--7692Chr12:657042..657066 (25 bp)
GGGTCGGCTTTGAAAACAGGATTCT
LOC_Os12g02150
Os.46014.1.S1_s_at--214--2132Chr12:657057..657081 (25 bp)
ACAGGATTCTGGACGATGGTGGACA
LOC_Os12g02150
Os.46014.1.S1_s_at--1154--8112Chr12:657077..657101 (25 bp)
GGACATGGCAAGTGGGAAATACCTT
LOC_Os12g02150
Os.46014.1.S1_s_at--1102--7472Chr12:657088..657112 (25 bp)
GTGGGAAATACCTTTGGCGCACTCT
LOC_Os12g02150
Os.46014.1.S1_s_at--741--8152Chr12:657091..657115 (25 bp)
GGAAATACCTTTGGCGCACTCTTGT
LOC_Os12g02150
Os.46014.1.S1_s_at--324--4352Chr12:657149..657173 (25 bp)
CCAGTGATGGAGTTCTGATATTTAT
LOC_Os12g02150
Os.46014.1.S1_s_at--1045--6232Chr12:657245..657269 (25 bp)
GATGGCAACTGTAACATGAGGATTA
LOC_Os12g02150
Os.46014.1.S1_s_at--442--10032Chr12:657293..657317 (25 bp)
TAGTTCACGTTTGAGCCTTTTCGTG
LOC_Os12g02150
Os.46014.1.S1_s_at--754--9672Chr12:657297..657321 (25 bp)
TCACGTTTGAGCCTTTTCGTGTAAC
LOC_Os12g02150
Os.46014.1.S1_s_at--714--10612Chr12:657312..657336 (25 bp)
TTCGTGTAACCTAAAACAATGAGTG
LOC_Os12g02150
Target Sequence 
TCCATTCCAAGGTTGGGTCGGCTTTGAAAACAGGATTCTGGACGATGGTGGACATGGCAAGTGGGAAATACCTTTGGCGC
ACTCTTGTTTCACCACCGACAAAATGCGAATCTGAGAAGGNCCAGTGATGGAGTTCTGATATTTATATCATACTTAGTTG
ATTTGGGAACANNGATGTAACCCCTATTGTGGNTANATTCTGTTGTTGAAGTGTAGTACGATGGCAACTGTAACATGAGG
ATTACATCTTGAAGTAAATGTACAAAATAGTTCACGTTTGAGCCTTTTCGTGTAACCTAAAACAATGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46014.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis