Browse Element(s) Details


Os.46065.1.S1_at

Description gb:AK071253.1
DB_XREF= gi:32981276
TID=Os.46065.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxin (OSJNBa0006L06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087G24, full insert sequence.
FL= gb:AK071253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3296011/11Pex2/Pex12 amino terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g33000OsAffx.20354.1.S1_at2/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33000Os.46995.1.S1_x_at1/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33010NANA10+16950816..16956937retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007031biological_processperoxisome organization and biogenesis
GO:0048598biological_processembryonic morphogenesis
GO:0005777cellular_componentperoxisome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46065.1.S1_at--1014--131Chr10:16925924..16925948 (25 bp)
ATTAGACAGAACACACTCTTCTCCC
LOC_Os10g32960
Os.46065.1.S1_at--60--9831Chr10:16925972..16925996 (25 bp)
TAAAGAATCGTACTATGCAGCTATT
LOC_Os10g32960
Os.46065.1.S1_at--492--10531Chr10:16925995..16926019 (25 bp)
TTCATTTTTGTTGAACAGACCACAA
LOC_Os10g32960
Os.46065.1.S1_at--548--1371Chr10:16926011..16926035 (25 bp)
AGACCACAAGGAACTCAGCCCTTCT
LOC_Os10g32960
Os.46065.1.S1_at--202--1671Chr10:16926027..16926051 (25 bp)
AGCCCTTCTGACACTCAAGGCATGG
LOC_Os10g32960
Os.46065.1.S1_at--482--9731Chr10:16926041..16926065 (25 bp)
TCAAGGCATGGCCATCTACTCAAGA
LOC_Os10g32960
Os.46065.1.S1_at--231--3551Chr10:16926053..16926077 (25 bp)
CATCTACTCAAGAACAGTGCTGTTG
LOC_Os10g32960
Os.46065.1.S1_at--172--4211Chr10:16926085..16926109 (25 bp)
CCCCGTTAGGAAATTCTATGTTCAT
LOC_Os10g32960
Os.46065.1.S1_at--661--4931Chr10:16926115..16926139 (25 bp)
GCTTGTATTCGTTTTCTTCTGTTGA
LOC_Os10g32960
Os.46065.1.S1_at--289--2491Chr10:16926149..16926173 (25 bp)
AACATGCACAGCTCGAGATTTTGGT
LOC_Os10g32960
Os.46065.1.S1_at--42--4811Chr10:16926159..16926183 (25 bp)
GCTCGAGATTTTGGTACTGATGTGC
LOC_Os10g32960
Target Sequence 
ATTAGACAGAACACACTCTTCTCCCCAAAGATCAGGGGAAGCCGGATATAAAGAATCGTACTATGCAGCTATTCATTTTT
GTTGAACAGACCACAAGGAACTCAGCCCTTCTGACACTCAAGGCATGGCCATCTACTCAAGAACAGTGCTGTTGATTCTT
CCCCCGTTAGGAAATTCTATGTTCATACAAAGCTTGTATTCGTTTTCTTCTGTTGAAATCAAAAAAACATGCACAGCTCG
AGATTTTGGTACTGATGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis