Browse Element(s) Details


Os.46065.2.S1_x_at

Description gb:NM_196931.1
DB_XREF= gi:37535221
TID=Os.46065.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46065 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peroxin (OSJNBa0006L06.8), mRNA.
PROD=putative peroxin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g329609/11Pex2/Pex12 amino terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32970Os.415.1.S1_at10/1110+16928803..16932188Eukaryotic translation initiation factor 4E-2, putative, expressed
LOC_Os10g32980Os.3206.1.S1_at11/1110+16932660..16937186Cellulose synthase A catalytic subunit 4, putative, expressed
LOC_Os10g32990Os.46117.1.S1_at10/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.8923.1.A1_at2/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990OsAffx.30096.1.S1_x_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g32990Os.10728.1.S1_at1/1110+16937863..16943228Leucine Rich Repeat family protein, expressed
LOC_Os10g33000OsAffx.20354.1.S1_at2/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33000Os.46995.1.S1_x_at1/1110+16947555..16950486retrotransposon protein, putative, unclassified
LOC_Os10g33010NANA10+16950816..16956937retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007031biological_processperoxisome organization and biogenesis
GO:0048598biological_processembryonic morphogenesis
GO:0005777cellular_componentperoxisome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46065.2.S1_x_at--136--10091Chr10:16924133..16924157 (25 bp)
TAGGTGTTTGCTATCCATGGATTCA
LOC_Os10g32960
Os.46065.2.S1_x_at--897--5311NONE
GAAGGTCTCTCATTTGCTTACCAGT
NONE
Os.46065.2.S1_x_at--1013--1491Chr10:16924561..16924585 (25 bp)
AGCACTGCATGCTCTTGGGCTTCAT
LOC_Os10g32960
Os.46065.2.S1_x_at--682--8651Chr10:16924576..16924600 (25 bp)
TGGGCTTCATGTTTGTCGTGCTACA
LOC_Os10g32960
Os.46065.2.S1_x_at--1--951NONE
AGGACAAGAGCTGACCATGCAAAGG
NONE
Os.46065.2.S1_x_at--293--6591Chr10:16925114..16925138 (25 bp)
GATTGCTGCAGTTTTCTTTTTCAAG
LOC_Os10g32960
Os.46065.2.S1_x_at--509--8951Chr10:16925625..16925649 (25 bp)
TGACAGGACATTGTGCCCCTTATGC
LOC_Os10g32960
Os.46065.2.S1_x_at--305--3091Chr10:16925662..16925686 (25 bp)
AATAACCCTTCTGTTCTTTCTGCTT
LOC_Os10g32960
Os.46065.2.S1_x_at--1089--3671Chr10:16925677..16925701 (25 bp)
CTTTCTGCTTCTGGTTTTGTATTCT
LOC_Os10g32960
Os.46065.2.S1_x_at--189--3591Chr10:16925712..16925733 (22 bp)
CATTTTTAAGTCAGTCTCCCAGCAT
LOC_Os10g32960
Os.46065.2.S1_x_at--394--9831Chr10:16925850..16925874 (25 bp)
TAAAAGGTGCCCCATCACATTGATG
LOC_Os10g32960
Target Sequence 
TAGGTGTTTGCTATCCATGGATTCATGCGACCAATGAAGGTCTCTCATTTGCTTACCAGTTGCTGTATTTGTTGGATGGT
ACTGCATTTTATAGTCCAGCACTGCATGCTCTTGGGCTTCATGTTTGTCGTGCTACAGGACAAGAGCTGACCATGCAAAG
GGTGTTACTTAACTGTATGTACACTAGCCTAGATTATGCACAAACTGGTTTGATTGCTGCAGTTTTCTTTTTCAAGATGA
TGGAATGGTGGTATCAATCTGCTGAGGAAAGAATGTCAGCTCCGACTGTATATCCCCCACCCCCTCCTCCACCTCTGCCA
AAGGTTGCTAAAGATGGACTTCCCTTGCCCCCTGACAGGACATTGTGCCCCTTATGCTGCCAGAAGCGCAATAACCCTTC
TGTTCTTTCTGCTTCTGGTTTTGTATTCTGCTACAGTTGCATTTTTAAGTCAGTCTCCCAGCATAAAAGGTGCCCCATCA
CATTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46065.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis