Browse Element(s) Details


Os.46081.1.S1_at

Description gb:AK060177.1
DB_XREF= gi:32970195
TID=Os.46081.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proline-rich protein (OSJNBb0048O22.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A05, full insert sequence.
FL= gb:AK060177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1385011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13820OsAffx.6667.1.S1_at6/1110+7269688..7271350hypothetical protein
LOC_Os10g13820Os.27691.2.S1_at1/1110+7269688..7271350hypothetical protein
LOC_Os10g13830Os.46553.1.S1_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13830Os.46553.2.S1_x_at11/1110+7280113..7284443ABC transporter family protein, putative, expressed
LOC_Os10g13840OsAffx.30408.1.S1_at11/1110+7286322..7291035hypothetical protein
LOC_Os10g13850Os.46081.1.S1_at11/1110+7294503..7295642expressed protein
LOC_Os10g13870OsAffx.28841.1.S1_at6/1110+7303051..7304424expressed protein
LOC_Os10g13870OsAffx.27597.1.S1_at1/1110+7303051..7304424expressed protein
LOC_Os10g13880OsAffx.8353.1.S1_at11/1110+7309083..7310097hypothetical protein
LOC_Os10g13900OsAffx.30410.1.S1_at10/1110+7318147..7319931transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46081.1.S1_at--930--4511Chr10:7295040..7295064 (25 bp)
GCCCGAGTCTTCAACGCCGGAGCGT
LOC_Os10g13850
Os.46081.1.S1_at--367--4791Chr10:7294999..7295023 (25 bp)
GCTCTGCGACGACAAAGGGATCTTC
LOC_Os10g13850
Os.46081.1.S1_at--43--8371Chr10:7294932..7294956 (25 bp)
GGCGTGCCAATTCCGCCGAATCCAA
LOC_Os10g13850
Os.46081.1.S1_at--518--511Chr10:7294816..7294840 (25 bp)
ATCGTCGTTAATACCGCCGGTGCTG
LOC_Os10g13850
Os.46081.1.S1_at--728--1771Chr10:7294696..7294720 (25 bp)
ACCGGCTTCGGCTTCCAGGAGTGGC
LOC_Os10g13850
Os.46081.1.S1_at--355--1111Chr10:7294666..7294690 (25 bp)
AGTGAGTACGCCCTGAGCAACTTAA
LOC_Os10g13850
Os.46081.1.S1_at--158--4551Chr10:7294657..7294681 (25 bp)
GCCCTGAGCAACTTAACACGCTGAT
LOC_Os10g13850
Os.46081.1.S1_at--357--4131Chr10:7294639..7294663 (25 bp)
CGCTGATTATTCTAGCTATGTGCTA
LOC_Os10g13850
Os.46081.1.S1_at--780--6271Chr10:7294609..7294633 (25 bp)
GATGTACGGCAAGCATGTAATCCTA
LOC_Os10g13850
Os.46081.1.S1_at--577--6451Chr10:7294583..7294607 (25 bp)
GATCAAGAATCTACTGCAGTATACT
LOC_Os10g13850
Os.46081.1.S1_at--169--3651Chr10:7294544..7294568 (25 bp)
CTTTTGGAATTTACCGACATGTCGA
LOC_Os10g13850
Target Sequence 
GCCCGAGTCTTCAACGCCGGAGCGTTCGCCGTCCACCCGGAGCTCTGCGACGACAAAGGGATCTTCTTCCCGCCGCTCCC
TCTCGTGCCGGAGCCGCCGAACATCGGCGGCGTGCCAATTCCGCCGAATCCAATCACGCCGGCGCCGCCGTCTCTCGTCC
CGCCGGTGTTCCCCACCCCATCTCCACCATCAATCCTGCCGCCGCTCACCCCACAACCGCCGCCATCGTCGTTAATACCG
CCGGTGCTGCCGCTGCCGTTGCTCAACCCACCACCGCCTCCACCGCCCCCGCCATCTCTTCTACCGCCAGTGCCCCTCCT
CCCGCCGTTGATCCCCGGCGTGCCACCGGCTTCGGCTTCCAGGAGTGGCCGGCCAGTGAGTACGCCCTGAGCAACTTAAC
ACGCTGATTATTCTAGCTATGTGCTAATTAAGATGTACGGCAAGCATGTAATCCTAAGATCAAGAATCTACTGCAGTATA
CTGCAATCAATGTATACTTTTGGAATTTACCGACATGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis