Browse Element(s) Details


Os.46127.1.S1_x_at

Description gb:NM_197158.1
DB_XREF= gi:37535675
TID=Os.46127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0041P03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3526011/11Rf1 protein, mitochondrial precursor, putative
LOC_Os10g352408/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g354365/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g352303/11Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g357902/11Rf1 protein, mitochondrial precursor, putative
LOC_Os08g150001/11Rf1 protein, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35230Os.46057.1.S1_at11/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46127.1.S1_x_at3/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35230Os.46382.2.S1_x_at2/1110+18494070..18495721Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46127.1.S1_x_at--414--6976Chr10:18622691..18622715 (25 bp)
GTAGCCCACCTGATGTGGTGTCGTA
LOC_Os10g35436
Os.46127.1.S1_x_at--640--7673Chr10:18622748..18622772 (25 bp)
GGGATTCAGACAAAGCTTACAGTAC
LOC_Os10g35436
Os.46127.1.S1_x_at--54--3011Chr10:18518175..18518199 (25 bp)
AATGCTTGATCGGAGGATTTCACCA
LOC_Os10g35260
Os.46127.1.S1_x_at--167--6411Chr10:18518168..18518192 (25 bp)
GATCGGAGGATTTCACCAAATGTTG
LOC_Os10g35260
Os.46127.1.S1_x_at--6--5854Chr10:18622815..18622839 (25 bp)
GACCTACAGCTCTATTATTGCTGCG
LOC_Os10g35436
Os.46127.1.S1_x_at--482--6796Chr10:18606918..18606942 (25 bp)
GTTATGCAAGGCTCAAGCTATGGAC
LOC_Os10g35436
Os.46127.1.S1_x_at--288--7953Chr10:18518015..18518039 (25 bp)
GGATATTGCTCTTCAGGGCAGCCAA
LOC_Os10g35260
Os.46127.1.S1_x_at--376--6451Chr10:18517924..18517948 (25 bp)
GATCACTGATGAATTATCTTTGCAA
LOC_Os10g35260
Os.46127.1.S1_x_at--429--5572Chr10:18517876..18517900 (25 bp)
GAAAGATTTTCGATTCTATGACCAA
LOC_Os10g35260
Os.46127.1.S1_x_at--668--5872Chr10:18517841..18517865 (25 bp)
GAGCCTGATATTGCTACCTATCGTA
LOC_Os10g35260
Os.46127.1.S1_x_at--676--7855Chr10:18617643..18617667 (25 bp)
GGTATGCTACCAAAGGAGCCCTTGT
LOC_Os10g35436
Target Sequence 
GTAGCCCACCTGATGTGGTGTCGTATACCACTGTCATCAATGGCTTCTTCAAAGAGGGGGATTCAGACAAAGCTTACAGT
ACATACCATGAAATGCTTGATCGGAGGATTTCACCAAATGTTGTGACCTACAGCTCTATTATTGCTGCGTTATGCAAGGC
TCAAGCTATGGACAAAGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTGATTGCATGACATATAATA
GTATTCTGCATGGATATTGCTCTTCAGGGCAGCCAAAAGAGGCTATTGGAACACTCAAAAAGATGCGCAGTGATGGCGTC
GAACCAAATGTTGTTACTTATAGATCACTGATGAATTATCTTTGCAAGAATGGAAGATGCACCGAAGCTAGAAAGATTTT
CGATTCTATGACCAAGAGGGGCCTAGAGCCTGATATTGCTACCTATCGTACCCTGCTTCAGGGGTATGCTACCAAAGGAG
CCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46127.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis