Browse Element(s) Details


Os.46184.1.A1_at

Description gb:AK100836.1
DB_XREF= gi:32986045
TID=Os.46184.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093I09.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123E13, full insert sequence.
FL= gb:AK100836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1807011/11expressed protein
LOC_Os12g126501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18010OsAffx.20536.2.S1_x_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.2.S1_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.1.S1_x_at3/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20666.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.30370.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18026OsAffx.20536.1.S1_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.1.S1_x_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20666.1.S1_x_at4/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.2.S1_x_at2/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.30370.1.S1_x_at1/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18042Os.46306.1.S1_x_at2/1110+8812471..8814672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18060OsAffx.20535.1.S1_at11/1110+8820983..8826396retrotransposon protein, putative, unclassified
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein
LOC_Os10g18080OsAffx.8288.1.S1_at11/1110+8835647..8836474hypothetical protein
LOC_Os10g18084NANA10+8838519..8838840hypothetical protein
LOC_Os10g18090Os.15896.1.S1_at11/1110+8839441..8839887hypothetical protein
LOC_Os10g18099NANA10+8853247..8853564hypothetical protein
LOC_Os10g18110OsAffx.30442.1.S1_at11/1110+8857513..8860640WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46184.1.A1_at--1005--5072Chr12:6975213..6975232 (20 bp)
GCACCATTGGTGAGTCGTGTGGCTT
LOC_Os12g12650
Os.46184.1.A1_at--933--5311Chr10:8832945..8832969 (25 bp)
GAAGGTCCGTGGTTGCTGTAATGTT
LOC_Os10g18070
Os.46184.1.A1_at--388--731Chr10:8832965..8832989 (25 bp)
ATGTTGGATGGTATGTTGCACCTGA
LOC_Os10g18070
Os.46184.1.A1_at--1025--10731Chr10:8832980..8833004 (25 bp)
TTGCACCTGAGGTTCATAGCTCGGA
LOC_Os10g18070
Os.46184.1.A1_at--959--6731Chr10:8832991..8833015 (25 bp)
GTTCATAGCTCGGAGAAAAGGCTCT
LOC_Os10g18070
Os.46184.1.A1_at--867--5511Chr10:8833005..8833029 (25 bp)
GAAAAGGCTCTAAACGGGATCATGA
LOC_Os10g18070
Os.46184.1.A1_at--1159--2571Chr10:8833017..8833041 (25 bp)
AACGGGATCATGAAATTGCTTGTTC
LOC_Os10g18070
Os.46184.1.A1_at--290--8751Chr10:8833134..8833158 (25 bp)
TGTAAATTCCTTATCTTTTCTGTTA
LOC_Os10g18070
Os.46184.1.A1_at--274--551Chr10:8833241..8833265 (25 bp)
ATCCCGTTAATGCATCTCCATCAAT
LOC_Os10g18070
Os.46184.1.A1_at--64--5151Chr10:8833319..8833343 (25 bp)
GCAAAATTTGCTCAGTAGTCACTAG
LOC_Os10g18070
Os.46184.1.A1_at--341--1191Chr10:8833332..8833356 (25 bp)
AGTAGTCACTAGATTGTAGTTCTGA
LOC_Os10g18070
Target Sequence 
GCACCATTGGTGAGTCGTGTGGCTTGAGAAGGTCCGTGGTTGCTGTAATGTTGGATGGTATGTTGCACCTGAGGTTCATA
GCTCGGAGAAAAGGCTCTAAACGGGATCATGAAATTGCTTGTTCAATCAGAGCAAAGAAACATGGAAGCTCCACCCANCC
AGNTAAATACTNGAGCTCGCTNCCTNCTTNGGTCAAGGTGAATTGGNCGACATTGCCTATGTAAATTCCTTATCTTTTCT
GTTATTCCTTAAATTTTTTGTTAGAAGAGATAACCTGCTTCATCCCGTTAATTCCTTAAATTTTTGTTAGAAGAGATAAC
CTGCTTCATCCCGTTAATGCATCTCCATCAATGGTGGATGTTTGAAATGACCATTTTAATTNCCCATGAAGGAATTAAAC
ANACCNGCAAAATTTGCTCAGTAGTCACTAGATTGTAGTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46184.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis