Browse Element(s) Details


Os.46287.1.S1_a_at

Description gb:AK119823.1
DB_XREF= gi:37989446
TID=Os.46287.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-177-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D06, full insert sequence.
FL= gb:AK119823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4077011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40720OsAffx.15049.1.S1_at10/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40720Os.55837.1.S1_x_at1/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40730NANA5+23795611..23798327hypothetical protein
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40750Os.37083.2.S1_at2/115+23804950..23806506retrotransposon protein, putative, unclassified
LOC_Os05g40760OsAffx.22940.1.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.3.S1_x_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.18.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.3.S1_x_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.31552.2.S1_at1/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40770Os.46287.1.S1_a_at11/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40770Os.52122.1.S1_at1/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein
LOC_Os05g40790Os.13515.1.S1_at11/115+23833218..23840358NOT2/NOT3/NOT5 family protein, expressed
LOC_Os05g40800OsAffx.15050.1.S1_at11/115+23842764..23845047hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46287.1.S1_a_at--330--9371Chr05:23816614..23816638 (25 bp)
TCGAGGCCATGCTGCAGAACGAGCC
LOC_Os05g40770
Os.46287.1.S1_a_at--625--611Chr05:23816606..23816630 (25 bp)
ATGCTGCAGAACGAGCCCGACGACG
LOC_Os05g40770
Os.46287.1.S1_a_at--247--1811Chr05:23816497..23816521 (25 bp)
ACCCCTACAGCGACGTGGAGATCAG
LOC_Os05g40770
Os.46287.1.S1_a_at--275--6231Chr05:23816453..23816477 (25 bp)
GATGGCGCGTCGGATTACATGCCCT
LOC_Os05g40770
Os.46287.1.S1_a_at--744--7171Chr05:23816445..23816469 (25 bp)
GTCGGATTACATGCCCTATTTTGAG
LOC_Os05g40770
Os.46287.1.S1_a_at--1018--571Chr05:23816435..23816459 (25 bp)
ATGCCCTATTTTGAGGTCAAGCCCA
LOC_Os05g40770
Os.46287.1.S1_a_at--499--7831Chr05:23816421..23816445 (25 bp)
GGTCAAGCCCAAGTAGTCATCATTA
LOC_Os05g40770
Os.46287.1.S1_a_at--177--6311Chr05:23816385..23816409 (25 bp)
GATGAGGGTGTTGTTTGTTTCAGTT
LOC_Os05g40770
Os.46287.1.S1_a_at--55--10671Chr05:23816355..23816379 (25 bp)
TTCCTTTGTTCTTTCTCCTTTTCAG
LOC_Os05g40770
Os.46287.1.S1_a_at--318--10572Chr05:23816347..23816371 (25 bp)
TTCTTTCTCCTTTTCAGCTTGTGAT
LOC_Os05g40770
Os.46287.1.S1_a_at--786--7031Chr05:23816317..23816341 (25 bp)
GTAAATTTTGTATGTGTTGCGAGTT
LOC_Os05g40770
Target Sequence 
TCGAGGCCATGCTGCAGAACGAGCCCGACGACGCCGGCGCCGGGGAGGGGGACAGCTCCGCCGACCCGTCCGCCAACGAG
TTCGACCGCCACCGCGGCGGTGGCGGCCCGCCGGCGCACCCCTACAGCGACGTGGAGATCAGCCGGGGATCGTACGCCGG
CGATGGCGCGTCGGATTACATGCCCTATTTTGAGGTCAAGCCCAAGTAGTCATCATTAGATTGTAAATTGATGAGGGTGT
TGTTTGTTTCAGTTTTTTTTTCCTTTGTTCTTTCTCCTTTTCAGCTTGTGATGAATTGTAAATTTTGTATGTGTTGCGAG
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46287.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis