Browse Element(s) Details


Os.46300.1.S1_at

Description gb:NM_195284.1
DB_XREF= gi:37531927
TID=Os.46300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46300 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0040E17.26), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g582709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58210Os.53350.1.S1_at9/114+34445870..34449567Uncharacterized LmbE-like protein, COG2120 containing protein, expressed
LOC_Os04g58220NANA4+34450328..34452578Sugar transporter family protein
LOC_Os04g58230NANA4+34453776..34455771Sugar transporter family protein
LOC_Os04g58240Os.7635.1.S1_s_at11/114+34458466..34462684expressed protein
LOC_Os04g58240OsAffx.4209.1.S1_at11/114+34458466..34462684expressed protein
LOC_Os04g58250Os.53193.1.S1_at11/114+34461561..34466002protein kinase family protein, putative, expressed
LOC_Os04g58270Os.46300.1.S1_at9/114+34471063..34472908hypothetical protein
LOC_Os04g58280Os.37834.1.S1_a_at11/114+34475300..34477144Stem-specific protein TSJT1, putative, expressed
LOC_Os04g58290OsAffx.19542.3.S1_x_at2/114+34481250..34483032retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58300NANA4+34483428..34485414retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g58310Os.16463.1.S1_at11/114+34487508..34488909expressed protein
LOC_Os04g58320Os.12918.2.S1_x_at11/114+34495653..34498205RNA-binding protein, putative, expressed
LOC_Os04g58320Os.12918.1.S1_s_at8/114+34495653..34498205RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46300.1.S1_at--766--831Chr10:6063870..6063894 (25 bp)
ATGGATGTCCTCTCATGATGGCTGC
NONE
Os.46300.1.S1_at--98--5052Chr04:34472564..34472588 (25 bp)
GCAGAAGCTTTAGCATGCATCCAAG
LOC_Os04g58270
Os.46300.1.S1_at--28--6352Chr04:34472639..34472663 (25 bp)
GATGCTCAAGCTCTGAAAGCGGCTT
LOC_Os04g58270
Os.46300.1.S1_at--1036--2572Chr04:34472693..34472717 (25 bp)
AACGCTGTTATCATTAGAGAGGCCA
LOC_Os04g58270
Os.46300.1.S1_at--326--6032Chr04:34472709..34472733 (25 bp)
GAGAGGCCAAATTTTTGCTTGCAAT
LOC_Os04g58270
Os.46300.1.S1_at--478--7272Chr04:34472744..34472768 (25 bp)
GTCCATCAAGTCATGTATTGTCCTA
LOC_Os04g58270
Os.46300.1.S1_at--128--5972Chr04:34472769..34472793 (25 bp)
GAGAATGTAATCGTGCTGCGCATGA
LOC_Os04g58270
Os.46300.1.S1_at--266--4012Chr04:34472780..34472804 (25 bp)
CGTGCTGCGCATGAGCTTGCTAAAA
LOC_Os04g58270
Os.46300.1.S1_at--702--2452Chr04:34472801..34472825 (25 bp)
AAAATTGGTGCTTCTCTGGGTCCAC
LOC_Os04g58270
Os.46300.1.S1_at--31--3912Chr04:34472816..34472840 (25 bp)
CTGGGTCCACGAAGCCAATTTGTTT
LOC_Os04g58270
Os.46300.1.S1_at--1045--8752Chr10:6063539..6063563 (25 bp)
TGTTTGGCTTGAAGGATTCCCAGAT
NONE
Target Sequence 
ATGGATGTCCTCTCATGATGGCTGCTGGGAATTTACAGAATTTGCATAATGCTAATCAAGCAGAAGCTTTAGCATGCATC
CAAGCTTTGAAATTAGCTAATGATATGGGAATGGGCCACATTATTGTTGAAACTGATGCTCAAGCTCTGAAAGCGGCTTT
GTTGGATGAAACACAGGATAGAAGTGTAAACGCTGTTATCATTAGAGAGGCCAAATTTTTGCTTGCAATGAATTTTAATG
TCCATCAAGTCATGTATTGTCCTAGAGAATGTAATCGTGCTGCGCATGAGCTTGCTAAAATTGGTGCTTCTCTGGGTCCA
CGAAGCCAATTTGTTTGGCTTGAAGGATTCCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis