Browse Element(s) Details


Os.4633.1.S1_at

Description gb:AK121388.1
DB_XREF= gi:37991011
TID=Os.4633.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128J12, full insert sequence.
FL= gb:AK121388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g599705/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59920Os.12243.1.S1_at11/111+34973955..34977620cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g59930Os.12219.1.S1_at10/111+34978925..34982302oxidoreductase, FAD-binding family protein, expressed
LOC_Os01g59940OsAffx.23862.1.S1_at11/111+34985578..34986219hypothetical protein
LOC_Os01g59950Os.48290.1.A1_at4/111+34990847..34991751expressed protein
LOC_Os01g59970Os.4633.1.S1_at5/111+35001691..35002854expressed protein
LOC_Os01g59980Os.13253.1.S1_at11/111+35004885..35009062Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g59990Os.4678.1.S1_at11/111+35009369..3501222660S ribosomal protein L24, putative, expressed
LOC_Os01g60000Os.18605.1.S1_s_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60000OsAffx.23864.1.S1_at11/111+35012587..35016401pentatricopeptide, putative, expressed
LOC_Os01g60010OsAffx.23865.1.S1_at11/111+35016718..35018366pentatricopeptide, putative, expressed
LOC_Os01g60020Os.4384.1.S1_at11/111+35019726..35021240No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4633.1.S1_at--621--10311Chr01:35002748..35002769 (22 bp)
TTTCATCTGTGCCTCTGTCCAGAAG
LOC_Os01g59970
Os.4633.1.S1_at--683--10771Chr01:35002603..35002627 (25 bp)
TTGAGGAACCACCAAGCATCAGTCT
LOC_Os01g59970
Os.4633.1.S1_at--297--411Chr01:35002586..35002610 (25 bp)
ATCAGTCTCTGCTCTGGAGGCGCCT
LOC_Os01g59970
Os.4633.1.S1_at--621--7391Chr01:35001741..35001765 (25 bp)
GTGATCGAGGTCAACGACTACCCTG
LOC_Os01g59970
Os.4633.1.S1_at--496--4431Chr01:35001698..35001722 (25 bp)
GCCATGATCCTAAGAGCCCTGGAAG
LOC_Os01g59970
Os.4633.1.S1_at--820--9931Chr01:35001591..35001615 (25 bp)
TACGTAGTGATCGACATGCATGTGT
NONE
Os.4633.1.S1_at--307--6771Chr01:35001533..35001557 (25 bp)
GTTAAGTCTTCACCGATTATTATCA
NONE
Os.4633.1.S1_at--753--6551Chr01:35001491..35001515 (25 bp)
GATTAGCTAGCTACCACTCTAGTTT
NONE
Os.4633.1.S1_at--144--6911Chr01:35001423..35001447 (25 bp)
GTATCTGCACGTACATGTGTCCATG
NONE
Os.4633.1.S1_at--406--551Chr01:35001390..35001414 (25 bp)
ATCCGCCCGTTTTGTACATCTTGTG
NONE
Os.4633.1.S1_at--810--2091Chr01:35001375..35001399 (25 bp)
ACATCTTGTGTACTGCTTACTCAAT
NONE
Target Sequence 
TTTCATCTGTGCCTCTGTCCAGAAGCGTGTCCTTGAGGAACCACCAAGCATCAGTCTCTGCTCTGGAGGCGCCTGTTCAG
GTTGTGGCGGCGGCGGCTGAAGAGCGAGACCTCGACGAAGTGGCGGCGAGGATGGTGATCGAGGTCAACGACTACCCTGG
CTCCGGCGCCAACAACCGCCATGATCCTAAGAGCCCTGGAAGAGCATGAAACGATCTCTGATCTGATCTGATCTGCAGGG
CCTTGTTGATCGATACATATAGGAATATTCAGTATTAGCTTTTGTACGTAGTGATCGACATGCATGTGTGATATATGCAG
TGCTTGGACAGGGGCTTAGTTAGTTAAGTCTTCACCGATTATTATCAGATCGGGTGAAGAGGTTGATTAGCTAGCTACCA
CTCTAGTTTAAAAAAGAGAAGGAAACTTTTCAACAAGTTCNTTGTGATATATGTATCTGCACGTACATGTGTCCATGTCC
ACCCCATCCGCCCGTTTTGTACATCTTGTGTACTGCTTACTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis