Browse Element(s) Details


Os.46330.1.S1_at

Description gb:AK066284.1
DB_XREF= gi:32976302
TID=Os.46330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067C01, full insert sequence.
FL= gb:AK066284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0331011/11Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os05g269907/11Phospholipid-transporting ATPase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03300Os.14491.2.S1_x_at5/119+1585681..1599315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03300Os.47463.1.S1_x_at5/119+1585681..1599315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03300OsAffx.22896.1.S1_x_at1/119+1585681..1599315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03300OsAffx.940.1.S1_x_at1/119+1585681..1599315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03300Os.41934.1.A1_x_at1/119+1585681..1599315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03310Os.46330.1.S1_at11/119+1611177..1614358Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os09g03310OsAffx.17910.1.S1_at1/119+1611177..1614358Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os09g03310Os.7867.1.S1_x_at1/119+1611177..1614358Phospholipid-transporting ATPase 2, putative, expressed
LOC_Os09g03330NANA9+1616652..1617161transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g03340Os.27691.2.S1_x_at3/119+1620699..1621613retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03350OsAffx.7491.1.S1_x_at2/119+1622243..1625137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03350Os.27691.1.S1_x_at1/119+1622243..1625137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g03360OsAffx.5954.5.S1_x_at5/119+1629869..1631312retrotransposon protein, putative, unclassified
LOC_Os09g03370Os.54737.1.S1_at11/119+1635020..1637966Structural maintenance of chromosome 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46330.1.S1_at--478--7773Chr09:1611866..1611890 (25 bp)
GGTGAATTGTTCATGCATTACATCT
LOC_Os09g03310
Os.46330.1.S1_at--1053--8771Chr09:1611827..1611851 (25 bp)
TGTTTCATCCTTTCAGACTATACTG
LOC_Os09g03310
Os.46330.1.S1_at--996--5692Chr09:1611812..1611836 (25 bp)
GACTATACTGCATGATACCTTTTTC
LOC_Os09g03310
Os.46330.1.S1_at--491--6491Chr09:1611799..1611823 (25 bp)
GATACCTTTTTCTAGGCTGCAGGAA
LOC_Os09g03310
Os.46330.1.S1_at--1005--10091Chr09:1611787..1611811 (25 bp)
TAGGCTGCAGGAACTACACAGAATT
LOC_Os09g03310
Os.46330.1.S1_at--570--7833Chr09:1611711..1611735 (25 bp)
GGTCAATATTTTGTTTTGCTCTCTA
LOC_Os09g03310
Os.46330.1.S1_at--16--4811Chr09:1611694..1611718 (25 bp)
GCTCTCTAACTGATTGTTTTTCCTC
LOC_Os09g03310
Os.46330.1.S1_at--987--6813Chr09:1611679..1611703 (25 bp)
GTTTTTCCTCTCTAATTAGATGCCA
LOC_Os09g03310
Os.46330.1.S1_at--234--3413Chr09:1611382..1611406 (25 bp)
CAGCAACACTGCTGGTTGGTATATT
LOC_Os09g03310
Os.46330.1.S1_at--430--5613Chr09:1611336..1611360 (25 bp)
GACAATGAATTGCTCTAACTAGGTT
LOC_Os09g03310
Os.46330.1.S1_at--1115--4793Chr09:1611325..1611349 (25 bp)
GCTCTAACTAGGTTGCTTTTTCTTA
LOC_Os09g03310
Target Sequence 
GGTGAATTGTTCATGCATTACATCTAACACACTAATCTTTGTTTCATCCTTTCAGACTATACTGCATGATACCTTTTTCT
AGGCTGCAGGAACTACACAGAATTTTTTTCATGGATTTGTTCAATTATATTATCAATATTGATATATCATTTATTGGTCA
ATATTTTGTTTTGCTCTCTAACTGATTGTTTTTCCTCTCTAATTAGATGCCAGATTTCTAGATGCTGTTTCGCGTAACGA
TCCTGATATTGCCAAATTTCTCATGGTGATGGCTCTTTGCAGTACAGTTGTTCCTATCAAAAGAAATGATGGTACTATAA
CATACCAAGCACAATCACAAGACGAGGAAGCTTTGGTCACTGCTGCATCAAAACTAAATATGGTGCTTGCGAGTAAAGAC
AGCAACACTGCTGGTTGGTATATTTTTGTTAGATTAAGATGATATGACAATGAATTGCTCTAACTAGGTTGCTTTTTCTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis