Browse Element(s) Details


Os.46455.1.S1_at

Description gb:AK100339.1
DB_XREF= gi:32985548
TID=Os.46455.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0071K19.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full insert sequence.
FL= gb:AK071821.1 gb:AK100339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0156011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01530OsAffx.18071.1.S1_at11/1110+328501..331850Helix-loop-helix DNA-binding domain containing protein
LOC_Os10g01540Os.23259.1.S1_a_at11/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.2.S1_x_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.23259.1.S1_at10/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_s_at4/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540OsAffx.17065.1.A1_at2/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01540Os.6094.1.S1_at1/1110+332969..342160Notchless homolog 1, putative, expressed
LOC_Os10g01550Os.27042.1.S1_a_at11/1110+344801..351014transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g01560Os.46455.1.S1_at11/1110+356644..359862Protein kinase domain containing protein, expressed
LOC_Os10g01570Os.46741.1.S1_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01570Os.46741.2.S1_x_at11/1110+361454..366695DNA cytosine methyltransferase MET2a, putative, expressed
LOC_Os10g01580NANA10+370435..371193hypothetical protein
LOC_Os10g01590NANA10+374930..376357hypothetical protein
LOC_Os10g01600NANA10+377998..382873retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46455.1.S1_at--1059--111Chr10:357161..357185 (25 bp)
ATTAATCCGGGAGCTGGTGGACTCG
LOC_Os10g01560
Os.46455.1.S1_at--347--3551Chr10:356964..356988 (25 bp)
CATCGGAGATCTCGCGGCATCGGCA
LOC_Os10g01560
Os.46455.1.S1_at--799--4971Chr10:356948..356972 (25 bp)
GCATCGGCAGGTGGCCTTCGACAGC
LOC_Os10g01560
Os.46455.1.S1_at--943--3351Chr10:356865..356889 (25 bp)
CACCCAAGCGCTAATCATCACTAAT
LOC_Os10g01560
Os.46455.1.S1_at--1023--4571Chr10:356858..356882 (25 bp)
GCGCTAATCATCACTAATTCTTTTA
LOC_Os10g01560
Os.46455.1.S1_at--706--10151Chr10:356818..356842 (25 bp)
TATAATTAGCTGGTTTCACAAATCA
LOC_Os10g01560
Os.46455.1.S1_at--816--2251Chr10:356799..356823 (25 bp)
AAATCACCCTACACTCGTGGAGAAA
LOC_Os10g01560
Os.46455.1.S1_at--1059--10331Chr10:356769..356793 (25 bp)
TTTACTCCCGGTTGGATATCCATTT
LOC_Os10g01560
Os.46455.1.S1_at--1005--8551Chr10:356757..356781 (25 bp)
TGGATATCCATTTAATCCCGGTTTT
LOC_Os10g01560
Os.46455.1.S1_at--420--3731Chr10:356698..356722 (25 bp)
CTAAAGATGTATCCTTAGCCACCAA
LOC_Os10g01560
Os.46455.1.S1_at--1120--9691Chr10:356653..356677 (25 bp)
TCAACCGGGACTAAACAGACAATAG
LOC_Os10g01560
Target Sequence 
ATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGG
CGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTC
TCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGG
CGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAA
TTCTTTTATTTATCGATTNAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCC
CGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTA
GCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis