Browse Element(s) Details


Os.46497.2.S1_x_at

Description gb:NM_197237.1
DB_XREF= gi:37535833
TID=Os.46497.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0062C05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0062C05.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3605010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed
LOC_Os10g36050Os.46497.2.S1_at11/1110+18932862..18934452hypothetical protein
LOC_Os10g36050Os.46497.2.S1_x_at10/1110+18932862..18934452hypothetical protein
LOC_Os10g36060Os.2611.1.S1_a_at10/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.31528.1.S1_x_at3/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.30685.1.S1_x_at2/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36070Os.46576.2.S1_x_at11/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36070Os.46576.1.S1_x_at2/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46497.2.S1_x_at--850--2171Chr10:18932892..18932916 (25 bp)
ACACTTGCTACCAGATTAGCTTTGG
LOC_Os10g36050
Os.46497.2.S1_x_at--708--9951Chr10:18932908..18932932 (25 bp)
TAGCTTTGGCTAACCTTGATTTTAA
LOC_Os10g36050
Os.46497.2.S1_x_at--442--10731Chr10:18932923..18932943 (21 bp)
TTGATTTTAACATCTTACTGGGAGA
LOC_Os10g36050
Os.46497.2.S1_x_at--940--2351Chr10:18933682..18933706 (25 bp)
AAAGCTGGATGATCCGGATGGTCCT
LOC_Os10g36050
Os.46497.2.S1_x_at--840--7991Chr10:18933697..18933721 (25 bp)
GGATGGTCCTGACCCTGACAGAACC
LOC_Os10g36050
Os.46497.2.S1_x_at--517--5651Chr10:18933713..18933737 (25 bp)
GACAGAACCGCTGGGACAGTGTCTC
LOC_Os10g36050
Os.46497.2.S1_x_at--314--8651Chr10:18933724..18933748 (25 bp)
TGGGACAGTGTCTCTGCATCCTACT
LOC_Os10g36050
Os.46497.2.S1_x_at--423--9231NONE
TCCAGACTCCAGAGCGGCTTCGTAT
NONE
Os.46497.2.S1_x_at--753--1371Chr10:18934362..18934383 (22 bp)
AGAGCGGCTTCGTATCGCATCGATT
LOC_Os10g36050
Os.46497.2.S1_x_at--870--9971Chr10:18934371..18934395 (25 bp)
TATCGCATCGATTGCGCCACATGGA
LOC_Os10g36050
Os.46497.2.S1_x_at--647--71Chr10:18934381..18934405 (25 bp)
ATTGCGCCACATGGAGAGGCATGGA
LOC_Os10g36050
Target Sequence 
ACACTTGCTACCAGATTAGCTTTGGCTAACCTTGATTTTAACATCTTACTGGGAGATGAGATAAAGCTGGATGATCCGGA
TGGTCCTGACCCTGACAGAACCGCTGGGACAGTGTCTCTGCATCCTACTCCAGTCCTCCTCCAGACTCCAGAGCGGCTTC
GTATCGCATCGATTGCGCCACATGGAGAGGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46497.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis