Browse Element(s) Details


Os.46498.2.S1_x_at

Description gb:NM_195280.1
DB_XREF= gi:37531919
TID=Os.46498.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0040E17.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0040E17.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g113107/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11270Os.46538.1.S1_at11/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11270Os.38273.1.S1_at1/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein
LOC_Os10g11320OsAffx.18218.1.S1_at11/1110+6048125..6048670expressed protein
LOC_Os10g11330Os.20602.2.S1_x_at11/1110+6049861..6052041hAT family dimerisation domain containing protein
LOC_Os10g11340OsAffx.18219.1.S1_at10/1110+6052816..6055864nitroreductase family protein, putative
LOC_Os10g11354Os.26859.1.S1_at11/1110+6060932..6066946MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46498.2.S1_x_at--445--2931Chr10:6039080..6039104 (25 bp)
AAGGAATTGCTCCACCATGATGGCC
LOC_Os10g11310
Os.46498.2.S1_x_at--977--8871Chr10:6039063..6039087 (25 bp)
TGATGGCCCTAGTTGCTCAAGTATC
LOC_Os10g11310
Os.46498.2.S1_x_at--728--6071NONE
GAGTTTCTGCCAATTCGCACTGGGA
NONE
Os.46498.2.S1_x_at--715--2111Chr10:6038370..6038394 (25 bp)
ACATGTACTCGGTGTTGCTCGCCAA
LOC_Os10g11310
Os.46498.2.S1_x_at--1100--5931Chr10:6038314..6038338 (25 bp)
GAGCAGCGTGACACCTTGGAACTCA
LOC_Os10g11310
Os.46498.2.S1_x_at--469--1311Chr10:6038271..6038295 (25 bp)
AGATGTTGCTGTACGCTGCGAACCA
LOC_Os10g11310
Os.46498.2.S1_x_at--77--1491Chr10:6038215..6038239 (25 bp)
AGCAATGGCTGCGAGTTCATCACCA
LOC_Os10g11310
Os.46498.2.S1_x_at--699--391Chr10:6038197..6038221 (25 bp)
ATCACCATCGTGTCGTTACTAGCAC
LOC_Os10g11310
Os.46498.2.S1_x_at--323--271Chr10:6037296..6037320 (25 bp)
ATATGAATGCTATGTAGGCGGCCGT
NONE
Os.46498.2.S1_x_at--1030--4691Chr10:6037279..6037303 (25 bp)
GCGGCCGTGGCTTTGGCAACTTAGA
NONE
Os.46498.2.S1_x_at--251--5131Chr10:6037264..6037288 (25 bp)
GCAACTTAGAAGATCGTCGGCCCGT
NONE
Target Sequence 
AAGGAATTGCTCCACCATGATGGCCCTAGTTGCTCAAGTATCCCACGGAGGGAGAAGCTCGCGGAGATCGTGTGGAGTTT
CTGCCAATTCGCACTGGGATCAGTAAAGGCACCAAATCCACACGGCGAATCCATCCGCGACAGTGCAAACATGTACTCGG
TGTTGCTCGCCAACGAGCTTCTCGGCATCGAGTCGCGGTGGTGTGAGCAGCGTGACACCTTGGAACTCATCCTAGGGGTG
TGGGTGGAGATGTTGCTGTACGCTGCGAACCATTGCAGCCAGGAGTCGCATGCCAGGCAGCTCAGCAATGGCTGCGAGTT
CATCACCATCGTGTCGTTACTAGCACACCACTTCAAGTACTACTCTGGAGCATCCAGGGGCGCGGACGAGCTGTATGAGA
GTAACCCTTCAATGAGAACGGTAGCGGGATATGAATGCTATGTAGGCGGCCGTGGCTTTGGCAACTTAGAAGATCGTCGG
CCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46498.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis