Browse Element(s) Details


Os.46500.1.S1_at

Description gb:AK070418.1
DB_XREF= gi:32980442
TID=Os.46500.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (OSJNBb0072F04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049E23, full insert sequence.
FL= gb:AK070418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g328909/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g067905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g494205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g187404/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g039704/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g032501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g281101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g278001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g474301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g406501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed
LOC_Os04g32890Os.46500.1.S1_at9/114+19678051..19679973transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g32900NANA4+19687057..19687524transposon protein, putative, unclassified
LOC_Os04g32910OsAffx.30226.2.S1_s_at7/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_x_at6/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.442.1.S1_at5/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32910OsAffx.30226.2.S1_x_at3/114+19692468..19697175retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g32920Os.11262.2.S1_x_at11/114+19699278..19705074Potassium transporter 1, putative, expressed
LOC_Os04g32920Os.11262.1.S1_a_at11/114+19699278..19705074Potassium transporter 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46500.1.S1_at--944--1411NONE
AGACACTAATCCCTCCGTATACGGT
NONE
Os.46500.1.S1_at--1047--8834Chr11:8219432..8219456 (25 bp)
TGATGAATCGTCAACCGGCCAAGCG
NONE
Os.46500.1.S1_at--293--7094Chr11:8219441..8219465 (25 bp)
GTCAACCGGCCAAGCGAATGACCAT
NONE
Os.46500.1.S1_at--1157--3511Chr04:19678202..19678226 (25 bp)
CATGCATTGATGGTTTAGTTTAGGC
LOC_Os04g32890
Os.46500.1.S1_at--510--1215Chr11:8219484..8219503 (20 bp)
AGTTTAGGCAGGGTTTAGCTGATCA
NONE
Os.46500.1.S1_at--178--10459Chr12:25136776..25136800 (25 bp)
TTAGCTGATCAGATGTGGGCTGACC
LOC_Os12g40650
Os.46500.1.S1_at--1146--7474Chr01:28750484..28750508 (25 bp)
GTGGGCTGACCGTAATAACCATCAT
LOC_Os01g49420
Os.46500.1.S1_at--1079--6112Chr11:3323982..3324006 (25 bp)
GAGTGTAATATGTAGCCATGCAACT
LOC_Os11g06790
Os.46500.1.S1_at--865--4412Chr11:3323996..3324020 (25 bp)
GCCATGCAACTTGTATTTCTACCTT
LOC_Os11g06790
Os.46500.1.S1_at--466--196Chr11:8219560..8219584 (25 bp)
ATTTCTACCTTATTTGCTACATTTC
NONE
Os.46500.1.S1_at--129--10512Chr11:8219612..8219636 (25 bp)
TTAATTCGTGTGGACAGCTTGTTGT
NONE
Target Sequence 
AGACACTAATCCCTCCGTATACGGTTGAACGTGCATTTGGGTCACTAAAGAGGAGGTTCAAAGTTCTAGATGATGCCACT
CCATTCTTCCCATTTCGAACTCAAGTAGATATTGTTGTAACTTGTTGTATTATTCATAACTGGGTCATAAATGACGGAAT
TGATGAGCTTATAGCTCCATCTGATTGGACAAGTGAGGACATTGATGAATCGTCAACCGGCCAAGCGAATGACCATGCAT
TGATGGTTTAGTTTAGGCAGGGTTTAGCTGATCAGATGTGGGCTGACCGTAATAACCATCATGGAGTGTAATATGTAGCC
ATGCAACTTGTATTTCTACCTTATTTGCTACATTTCATTTGTATTATGAACTTCTTTTATTTATTTAATTCGTGTGGACA
GCTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis