Browse Element(s) Details


Os.46524.1.S1_x_at

Description gb:AK068318.1
DB_XREF= gi:32978336
TID=Os.46524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydrolase (OSJNBa0091J06.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151L12, full insert sequence.
FL= gb:AK068318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2296011/11hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22940OsAffx.8198.2.S1_at10/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.8198.1.S1_at9/1110+11600245..11602673hypothetical protein
LOC_Os10g22940Os.45902.1.A1_x_at4/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.10222.1.S1_x_at2/1110+11600245..11602673hypothetical protein
LOC_Os10g22950Os.25048.1.S1_at8/1110+11604242..11611524anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os10g22960Os.46524.1.S1_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.1.S1_x_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.2.S1_x_at6/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22970OsAffx.218.1.A1_at5/1110+11630557..11630793hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46524.1.S1_x_at--201--4011Chr10:11616544..11616568 (25 bp)
CGTCCTGCTTCATCAGAGACTACAT
LOC_Os10g22960
Os.46524.1.S1_x_at--622--2791Chr10:11619077..11619101 (25 bp)
AAGATCGGGTCTTTCCATTGGAACT
LOC_Os10g22960
Os.46524.1.S1_x_at--557--10871Chr10:11619101..11619191 (25 bp)
TTGGCCTACGGCTTAAGAGACATTT
LOC_Os10g22960
Os.46524.1.S1_x_at--762--6471Chr10:11619196..11619220 (25 bp)
GATACATCCGAGCTAGTCATTGTCA
LOC_Os10g22960
Os.46524.1.S1_x_at--55--2351Chr10:11619276..11619300 (25 bp)
AAAGAACTGTATCGCTGATCCGTCT
LOC_Os10g22960
Os.46524.1.S1_x_at--821--8851Chr10:11619291..11619315 (25 bp)
TGATCCGTCTGTCAAGTATCGAGAT
LOC_Os10g22960
Os.46524.1.S1_x_at--1019--2431Chr10:11619513..11619537 (25 bp)
AAAAGGTTTGCTGGGTCGAGTCTGA
LOC_Os10g22960
Os.46524.1.S1_x_at--16--6151Chr10:11619536..11619560 (25 bp)
GAGGAAGGTAGACTCTACCCGACCA
LOC_Os10g22960
Os.46524.1.S1_x_at--885--3711Chr10:11619550..11619574 (25 bp)
CTACCCGACCACTGTTATAATGCAT
LOC_Os10g22960
Os.46524.1.S1_x_at--704--631Chr10:11619569..11619593 (25 bp)
ATGCATATACTGACCAATACCATGT
LOC_Os10g22960
Os.46524.1.S1_x_at--788--1711Chr10:11619622..11619646 (25 bp)
ACCACGATAAGCAAACTTTCTCCCT
LOC_Os10g22960
Target Sequence 
CGTCCTGCTTCATCAGAGACTACATCAGGGTTATGTGCACTGAGAATGTCAAGGAAAAGACTGAGTTATTACATGCTTTG
ATCAATGGTAAGAAGCTTTCAGACCTTCCAAAAATTAACCAGCAAACCTTGATAATTTGGGGAGAGCAAGATCGGGTCTT
TCCATTGGAACTTGGCCTACGGCTTAAGAGACATTTGGGGGATACATCCGAGCTAGTCATTGTCAAGAACGCTGGACATG
CCATAAACCGCGAAAAGCCAGCTGAGCTATGTAGACTTATAAAGAACTGTATCGCTGATCCGTCTGTCAAGTATCGAGAT
GGTCACAAGGGGTCCTGGAAGAGTGCGATAAAAAGGTTTGCTGGGTCGAGTCTGAGGAAGGTAGACTCTACCCGACCACT
GTTATAATGCATATACTGACCAATACCATGTAAGAAATTTGACATCATATAAGTTTATAACCACGATAAGCAAACTTTCT
CCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46524.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis