Browse Element(s) Details


Os.46538.1.S1_at

Description gb:AK066828.1
DB_XREF= gi:32976846
TID=Os.46538.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flavonol 3-sulfotransferase (OSJNBb0038H12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075L15, full insert sequence.
FL= gb:AK066828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1127011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11230Os.47463.1.S1_x_at5/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11230Os.14491.2.S1_x_at4/1110+5993282..5996982transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11240OsAffx.20647.1.S1_at11/1110+5998784..6001847hypothetical protein
LOC_Os10g11250OsAffx.8398.1.S1_at11/1110+6002618..6007189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11260Os.14656.2.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.2.S1_x_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11260Os.14656.1.S1_at11/1110+6009693..6015999Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os10g11270Os.46538.1.S1_at11/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11270Os.38273.1.S1_at1/1110+6017219..6019621Sulfotransferase domain containing protein, expressed
LOC_Os10g11280OsAffx.8397.1.S1_at11/1110+6023789..6028093retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g11290NANA10+6030061..6031547retrotransposon protein, putative, unclassified
LOC_Os10g11310Os.46498.1.S1_at11/1110+6037808..6041839expressed protein
LOC_Os10g11310Os.46498.2.S1_x_at7/1110+6037808..6041839expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46538.1.S1_at--940--6091Chr10:6017794..6017818 (25 bp)
GAGTCTGTCCGCGAGTGTACATATT
LOC_Os10g11270
Os.46538.1.S1_at--1143--1651Chr10:6017764..6017788 (25 bp)
AGCCCAATTTGGGATCACATCCTTG
LOC_Os10g11270
Os.46538.1.S1_at--62--3311Chr10:6017749..6017773 (25 bp)
CACATCCTTGGGTACTGGAACGCGA
LOC_Os10g11270
Os.46538.1.S1_at--405--5031Chr10:6017644..6017668 (25 bp)
GCAGAGTTCATAGGCCAACCATTCT
LOC_Os10g11270
Os.46538.1.S1_at--1020--8171Chr10:6017606..6017630 (25 bp)
GGAAGCCAGCATCGTTGACAACATT
LOC_Os10g11270
Os.46538.1.S1_at--43--5631Chr10:6017590..6017614 (25 bp)
GACAACATTGTAGAGCTGTGCAGCT
LOC_Os10g11270
Os.46538.1.S1_at--751--4991Chr10:6017538..6017562 (25 bp)
GCATGGCAGGGTCTCAAAAGGTAAT
LOC_Os10g11270
Os.46538.1.S1_at--506--1231Chr10:6017505..6017529 (25 bp)
AGTTCCCCAATGATTCGTTCTTTAG
LOC_Os10g11270
Os.46538.1.S1_at--35--6251Chr10:6017398..6017422 (25 bp)
GATGGATCAGGCTTCACTTTCATGT
LOC_Os10g11270
Os.46538.1.S1_at--398--5091Chr10:6017307..6017331 (25 bp)
GCACCTGCACCACTCATGAATGATT
LOC_Os10g11270
Os.46538.1.S1_at--25--3311Chr10:6017240..6017264 (25 bp)
CACACATTTCTTATTCCTGATGGTT
LOC_Os10g11270
Target Sequence 
GAGTCTGTCCGCGAGTGTACATATTTTGGAAGCCCAATTTGGGATCACATCCTTGGGTACTGGAACGCGAGCAAGGTGAA
GCCAGATAACGTGTTAATCCTAAAGTATGAAGACATGAAGCGCAACCCCACCGAAAACGTCGAGAAGATCGCAGAGTTCA
TAGGCCAACCATTCTCCAACAGCGAGAAGGAAGCCAGCATCGTTGACAACATTGTAGAGCTGTGCAGCTTTGAGAAGATG
AAGGCTCTAGGTGCGAGCATGGCAGGGTCTCAAAAGGTAATTTCCTCCGAGTTCCCCAATGATTCGTTCTTTAGGAAGGG
TGCTATTGGAGATTGGGTGAACCACGTCACACCAGAGATGGCTGAGAGTCTAGATAAANTTCTCTCCGAAAAATTCGATG
GATCAGGCTTCACTTTCATGTGAGAACAATTCTATGATCTCCCCCTTTAATTACAGGGAAACAGGGTGCAAAGCATTTGA
AAGGGTAGCACCTGCACCACTCATGAATGATTTGAAATTAATGCAAATCACTATGTGTTATGTTATATTTGGGACACACA
TTTCTTATTCCTGATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis