Browse Element(s) Details


Os.46551.1.S1_at

Description gb:AK064736.1
DB_XREF= gi:32974754
TID=Os.46551.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flavonoid 3-hydroxylase (OSJNBa0053D03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C08, full insert sequence.
FL= gb:AK064736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1726011/11Flavonoid 3'-monooxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17220OsAffx.6678.1.S1_at11/1110+8323252..8323716hypothetical protein
LOC_Os10g17230NANA10+8334208..8336965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17240NANA10+8340121..8340327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17250Os.10703.2.S1_x_at1/1110+8340644..8346742retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17260Os.46551.1.S1_at11/1110+8347974..8349929Flavonoid 3'-monooxygenase, putative, expressed
LOC_Os10g17270OsAffx.30434.1.S1_at11/1110+8351456..8353955hypothetical protein
LOC_Os10g17270OsAffx.17567.1.S1_x_at1/1110+8351456..8353955hypothetical protein
LOC_Os10g17280Os.10703.1.S1_a_at11/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17280Os.10703.2.S1_x_at10/1110+8360530..8365878ATP synthase gamma chain, mitochondrial precursor, putative, expressed
LOC_Os10g17290OsAffx.20554.1.S1_at11/1110+8368042..8369336hypothetical protein
LOC_Os10g17300OsAffx.3761.1.S1_x_at2/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.30421.1.S1_s_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17300OsAffx.18377.1.S1_x_at1/1110+8371079..8374290hypothetical protein
LOC_Os10g17310NANA10+8374691..8377727retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46551.1.S1_at--304--9231Chr10:8349335..8349359 (25 bp)
TCCTAGTCAACGTCTGGGCTATAGC
LOC_Os10g17260
Os.46551.1.S1_at--245--9731Chr10:8349443..8349467 (25 bp)
TCAAGGGTGCTGATTTCGGCCTGAT
LOC_Os10g17260
Os.46551.1.S1_at--299--10611Chr10:8349457..8349481 (25 bp)
TTCGGCCTGATACCATTCGGAGCAG
LOC_Os10g17260
Os.46551.1.S1_at--1063--5731Chr10:8349482..8349506 (25 bp)
GACGGAGAATATGCGCTGGCCTTAG
LOC_Os10g17260
Os.46551.1.S1_at--56--691Chr10:8349532..8349556 (25 bp)
ATGACTGCCACGCTAGTGCACGGGT
LOC_Os10g17260
Os.46551.1.S1_at--565--6691Chr10:8349555..8349579 (25 bp)
GTTCGACTGGACCTTGGCTAACGGC
LOC_Os10g17260
Os.46551.1.S1_at--745--4591Chr10:8349580..8349604 (25 bp)
GCGACTCCGGACAAGCTCAACATGG
LOC_Os10g17260
Os.46551.1.S1_at--242--891Chr10:8349608..8349632 (25 bp)
AGGCCTATGGGCTCACCTTGCAGAG
LOC_Os10g17260
Os.46551.1.S1_at--124--2951Chr10:8349663..8349687 (25 bp)
AAGGCTGCTTCCATCGGCTTATGGA
LOC_Os10g17260
Os.46551.1.S1_at--434--5991Chr10:8349743..8349767 (25 bp)
GAGACTACTTGCAGTGTTGGCCGCA
LOC_Os10g17260
Os.46551.1.S1_at--385--1151Chr10:8349815..8349839 (25 bp)
AGTCTATCTCAGTGTTATCTGGCAC
LOC_Os10g17260
Target Sequence 
TCCTAGTCAACGTCTGGGCTATAGCCCGTGACCCGACCCAATGGCCCGACCCGCTACAGTACCAGCCTTCTCGGTTTCTC
CCCGGCAGGATGCATGCAGACGTGGATGTCAAGGGTGCTGATTTCGGCCTGATACCATTCGGAGCAGGACGGAGAATATG
CGCTGGCCTTAGTTGGGGCTTGCGGATGGTCACACTGATGACTGCCACGCTAGTGCACGGGTTCGACTGGACCTTGGCTA
ACGGCGCGACTCCGGACAAGCTCAACATGGAGGAGGCCTATGGGCTCACCTTGCAGAGGGCCGTGCCGTTGATGGTCCAG
CCCGTGCCAAGGCTGCTTCCATCGGCTTATGGAGTATAAAACCGGTCTACTTACTAGTACCACTTTAAATTAAGGTCAGA
AATCGGTGGAGACTACTTGCAGTGTTGGCCGCATTATATGACGTATTATTTTGTTTTGTTTGTTGGTGGAAAAATAAAGT
AGTCTATCTCAGTGTTATCTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis