Browse Element(s) Details


Os.46552.1.S1_at

Description gb:AK064648.1
DB_XREF= gi:32974666
TID=Os.46552.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46552 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056A20.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D08, full insert sequence.
FL= gb:AK064648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g036209/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03560OsAffx.18108.1.S1_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03560OsAffx.18108.1.S1_x_at11/1110+1523610..1524497CAF1 family ribonuclease containing protein
LOC_Os10g03570Os.47706.2.A1_at11/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03570OsAffx.30258.1.S1_at10/1110+1524942..1530551NB-ARC domain containing protein
LOC_Os10g03580OsAffx.30259.1.S1_at6/1110+1531991..1535233hypothetical protein
LOC_Os10g03590NANA10+1538899..1539105hypothetical protein
LOC_Os10g03600Os.46060.1.S1_at11/1110+1540926..1543953F-box domain containing protein, expressed
LOC_Os10g03610OsAffx.8542.1.S1_at11/1110+1545551..1546312DnaJ domain containing protein
LOC_Os10g03620Os.46552.1.S1_at9/1110+1546756..1549483F-box domain containing protein, expressed
LOC_Os10g03630NANA10+1558042..1558810hypothetical protein
LOC_Os10g03640OsAffx.30260.1.S1_at10/1110+1572006..1574645hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46552.1.S1_at--632--7991Chr10:1547202..1547226 (25 bp)
GGATGATAGTACTTTGCTCAAGCTC
LOC_Os10g03620
Os.46552.1.S1_at--279--4831Chr10:1547187..1547211 (25 bp)
GCTCAAGCTCGTGGAGGACATCTTT
LOC_Os10g03620
Os.46552.1.S1_at--166--6771Chr10:1547162..1547186 (25 bp)
GTTACTAGTGGCATGAACTCTCTTC
LOC_Os10g03620
Os.46552.1.S1_at--536--5471Chr10:1547148..1547172 (25 bp)
GAACTCTCTTCAGATTAATCGCAAA
LOC_Os10g03620
Os.46552.1.S1_at--662--991NONE
AGGATCATGCACTCACTTGTCACTA
NONE
Os.46552.1.S1_at--1160--7191Chr10:1547012..1547036 (25 bp)
GTCGTCAATATGATCACGCTGTTTG
LOC_Os10g03620
Os.46552.1.S1_at--718--3351NONE
CACGCTGTTTGTCGGATGAGCCTAA
NONE
Os.46552.1.S1_at--362--5871Chr10:1546981..1547005 (25 bp)
GAGCCTAAGTGCATGCATTTCTTCA
LOC_Os10g03620
Os.46552.1.S1_at--68--751Chr10:1546932..1546956 (25 bp)
ATGTTTACTGCACTCGTTTGCTGAT
LOC_Os10g03620
Os.46552.1.S1_at--856--7151Chr10:1546865..1546889 (25 bp)
GTCTCAAATTCCGACAGGGTGGTTT
LOC_Os10g03620
Os.46552.1.S1_at--526--1471Chr10:1546802..1546826 (25 bp)
AGAATGTGTGGCTACTTCTGTTGAT
LOC_Os10g03620
Target Sequence 
GGATGATAGTACTTTGCTCAAGCTCGTGGAGGACATCTTTGTTACTAGTGGCATGAACTCTCTTCAGATTAATCGCAAAA
GCAGTTACAAGCAGTACTATTCAGATGATTTTTTTCAGATTTGATTACGACAGTACGACTGCACAAGAACATGCGGAATG
ACAAAAGGATCATGCACTCACTTGTCACTAGTCGTCAATATGATCACGCTGTTTGTCGGATGAGCCTAAGTGCATGCATT
TCTTCAATTAGAATTTGAAGGCAGATAGACATGTTTACTGCACTCGTTTGCTGATATGGCTTGAGAACAAACAAGTGTGT
CTTGAGTTGCATGTAAGGTCTCAAATTCCGACAGGGTGGTTTACTTGTTTGGAAAATTTTCCCCAAAAAACAGTGATAAC
AGAATGTGTGGCTACTTCTGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46552.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis