Browse Element(s) Details


Os.4658.1.S1_x_at

Description gb:AK064141.1
DB_XREF= gi:32974159
TID=Os.4658.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A11, full insert sequence.
FL= gb:AK064141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3427011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34258OsAffx.29504.1.S1_at11/118+21354724..21355037inhibitor I family protein
LOC_Os08g34270Os.4658.2.S1_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_x_at11/118+21368062..21372300expressed protein
LOC_Os08g34270Os.4658.1.S1_at9/118+21368062..21372300expressed protein
LOC_Os08g34280Os.49689.1.S1_at11/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.8544.1.S1_at10/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34280Os.49292.2.S1_x_at1/118+21373618..21380814NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os08g34290Os.52887.1.S1_at10/118+21390633..21392921chorismate mutase family protein, expressed
LOC_Os08g34300Os.51887.1.S1_x_at10/118+21394039..21397849retrotransposon protein, putative, unclassified
LOC_Os08g34300Os.51887.1.S1_at8/118+21394039..21397849retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4658.1.S1_x_at--102--3951Chr08:21368160..21368184 (25 bp)
CGGAGCAGTGATGGCCGACGTCCTC
LOC_Os08g34270
Os.4658.1.S1_x_at--1009--3211Chr08:21368187..21368211 (25 bp)
CAAGGGCCGGGAAGCCTGCTACAAG
LOC_Os08g34270
Os.4658.1.S1_x_at--988--5791Chr08:21368317..21368341 (25 bp)
GACGCCTTCTACACGTGCGTGGAGA
LOC_Os08g34270
Os.4658.1.S1_x_at--64--1451Chr08:21368339..21368363 (25 bp)
AGAAGCACGCGGACAAGAAGCCCAC
LOC_Os08g34270
Os.4658.1.S1_x_at--247--7771Chr08:21368532..21368556 (25 bp)
GGTGAAGCACTTCGACCGGCAGTAC
LOC_Os08g34270
Os.4658.1.S1_x_at--178--3391Chr08:21368626..21368650 (25 bp)
CAGCCGTACACGTTCAAGCAATAGG
LOC_Os08g34270
Os.4658.1.S1_x_at--319--7611Chr08:21372103..21372122 (20 bp)
GGGAAAAGCTTGTCAAAGACTCGAA
LOC_Os08g34270
Os.4658.1.S1_x_at--506--2751Chr08:21372113..21372137 (25 bp)
AAGACTCGAAATGCTTTCATAATCA
LOC_Os08g34270
Os.4658.1.S1_x_at--145--10871Chr08:21372153..21372177 (25 bp)
TTGGTTATGACTGGGCTGGTAGTTT
LOC_Os08g34270
Os.4658.1.S1_x_at--282--7571Chr08:21372165..21372189 (25 bp)
GGGCTGGTAGTTTGTTTATGTGTAT
LOC_Os08g34270
Os.4658.1.S1_x_at--380--291Chr08:21372213..21372237 (25 bp)
ATAGTTCTGTAAATTGGGTTCTTGA
LOC_Os08g34270
Target Sequence 
CGGAGCAGTGATGGCCGACGTCCTCTCCAAGGGCCGGGAAGCCTGCTACAAGGCCCGGGACGCCTTCTACACGTGCGTGG
AGAAGCACGCGGACAAGAAGCCCACCGAGATCGCCACCATGGGGCTCCTCTACCCCGCCGACTGCAAGAAGTCCCGCGCC
AACTTCGTCAACAGCTGCCGCCCCTCCTGGGTGAAGCACTTCGACCGGCAGTACTCCGCCAAGAAGCGGGTGCAGCGGCT
GCTCGACGGCGGCGACGACCGCCGGGGCCCCATCTCGCTCCCCCAGCCGTACACGTTCAAGCAATAGGGAAAAGCTTGTC
AAAGACTCGAAATGCTTTCATAATCAATGGAAATGGAGATGTTGGTTATGACTGGGCTGGTAGTTTGTTTATGTGTATAT
AAGAATATAATAATAGTGTTTATAGTTCTGTAAATTGGGTTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4658.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis