Browse Element(s) Details


Os.46590.1.S1_at

Description gb:AK060060.1
DB_XREF= gi:32970078
TID=Os.46590.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 10-deacetylbaccatin III-10-O-acetyl transferase (OSJNBa0015O22.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F11, full insert sequence.
FL= gb:AK060060.1 gb:AK060361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0192011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01850Os.19099.1.S1_x_at11/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850OsAffx.30486.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01850Os.49373.1.S1_at1/1110+535554..542282retrotransposon, putative, centromere-specific
LOC_Os10g01860OsAffx.20812.1.S1_at11/1110+544493..545748retrotransposon protein, putative, LINE subclass
LOC_Os10g01870OsAffx.18080.1.S1_at11/1110+546822..548871hypothetical protein
LOC_Os10g01880NANA10+551558..553967hypothetical protein
LOC_Os10g01890OsAffx.435.1.S1_at11/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01890OsAffx.19377.1.S1_at1/1110+554759..558166retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01900OsAffx.20810.1.S1_at11/1110+558728..559919retrotransposon protein, putative, LINE subclass
LOC_Os10g01910OsAffx.20809.1.S1_at11/1110+560328..565291retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g01920Os.46590.1.S1_at11/1110+567171..568806Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_x_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.1.S1_at11/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01930OsAffx.20808.2.S1_s_at1/1110+575479..576822Transferase family protein, expressed
LOC_Os10g01940NANA10+578743..581549hypothetical protein
LOC_Os10g01950OsAffx.22699.1.S1_x_at2/1110+582287..586057retrotransposon protein, putative, unclassified
LOC_Os10g01960NANA10+586385..589183retrotransposon protein, putative, unclassified
LOC_Os10g01970NANA10+591288..593051retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46590.1.S1_at--963--9571Chr10:568214..568238 (25 bp)
TCTTCGCGGTGAACGCACGCAAGTA
LOC_Os10g01920
Os.46590.1.S1_at--295--2931Chr10:568249..568273 (25 bp)
AAGGACGGCTACTACGGATGCTGCA
LOC_Os10g01920
Os.46590.1.S1_at--741--5671Chr10:568321..568345 (25 bp)
GACATCATGAAGTTGGTCGGCATCA
LOC_Os10g01920
Os.46590.1.S1_at--647--7351Chr10:568432..568456 (25 bp)
GTGAATGGATACGAGAGCCTGCTCT
LOC_Os10g01920
Os.46590.1.S1_at--652--3491Chr10:568476..568500 (25 bp)
CATCGGGTTCGAGGACGTCGATTTC
LOC_Os10g01920
Os.46590.1.S1_at--1105--991Chr10:568540..568564 (25 bp)
AGGATGCTGTCCATGATGCCCAGGA
LOC_Os10g01920
Os.46590.1.S1_at--1075--7811Chr10:568605..568629 (25 bp)
GGTCAGGGTCATGTCAGACTGTGTT
LOC_Os10g01920
Os.46590.1.S1_at--990--3411Chr10:568619..568643 (25 bp)
CAGACTGTGTTACGGCTGACCACGC
LOC_Os10g01920
Os.46590.1.S1_at--213--1831Chr10:568640..568664 (25 bp)
ACGCCGATGCCTTCTATCAAGAAAT
LOC_Os10g01920
Os.46590.1.S1_at--637--2351Chr10:568675..568699 (25 bp)
AAAGCCACCACCTGATTATAACTAT
LOC_Os10g01920
Os.46590.1.S1_at--1071--10131Chr10:568701..568725 (25 bp)
TATGCGAGCTATCTATACCTTCTTC
LOC_Os10g01920
Target Sequence 
TCTTCGCGGTGAACGCACGCAAGTACCTCGGCGCCAAGGACGGCTACTACGGATGCTGCACCGCCATGCACATGGCCGTG
TCCAAGTCCGGCACGGTGGCCAACGGCGACATCATGAAGTTGGTCGGCATCATACGCCGCGCCAAGGAGCAGATACCGGA
GCAGCTGAAGGCAGACGACGGCGAGATGATGCTACGGACGATGGTAGGGGAGAAGCAGGTGAATGGATACGAGAGCCTGC
TCTACTTGACATCCTGGCGAAACATCGGGTTCGAGGACGTCGATTTCGGCAGCGGGAAGACGGCGAGGGTGATGACCTAC
CCGCCGAGGATGCTGTCCATGATGCCCAGGATTGCGCCCATCTGCTTCATGCTCAAGGCCACAGAGGAAGGGGTCAGGGT
CATGTCAGACTGTGTTACGGCTGACCACGCCGATGCCTTCTATCAAGAAATAGCCAAGCTCAAAGCCACCACCTGATTAT
AACTATATATGCGAGCTATCTATACCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis