Browse Element(s) Details


Os.46599.1.S1_at

Description gb:AK058916.1
DB_XREF= gi:32968934
TID=Os.46599.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0078O01.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A09, full insert sequence.
FL= gb:AK058916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3557011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35560Os.20562.1.S1_a_at11/1110+18686213..18695782expressed protein
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46599.1.S1_at--1077--10011Chr10:18701226..18701372 (25 bp)
TAGCACTCCCACTGCAAGCAAAGAT
LOC_Os10g35570
Os.46599.1.S1_at--325--6431Chr10:18701376..18701400 (25 bp)
GATCTTCGTGCTGTGAAAGTTCCAC
LOC_Os10g35570
Os.46599.1.S1_at--1030--2311Chr10:18701391..18701415 (25 bp)
AAAGTTCCACCTGTGATATTTCTGG
LOC_Os10g35570
Os.46599.1.S1_at--1149--10131Chr10:18702165..18702189 (25 bp)
TATGCCTTACAAACCAATCAGACAA
LOC_Os10g35570
Os.46599.1.S1_at--644--5611Chr10:18702185..18702209 (25 bp)
GACAAGACAGTTGGCCCTTTTGAAG
LOC_Os10g35570
Os.46599.1.S1_at--53--6891Chr10:18702209..18702233 (25 bp)
GTATTTTTAGCACCAAGCGTACTTG
LOC_Os10g35570
Os.46599.1.S1_at--917--7871Chr10:18702801..18702825 (25 bp)
GGTTTTGCCACTAGTTGAGGCTTTT
LOC_Os10g35570
Os.46599.1.S1_at--303--6211Chr10:18702817..18702841 (25 bp)
GAGGCTTTTGAATCCATCAACTTTG
LOC_Os10g35570
Os.46599.1.S1_at--774--5211Chr10:18703406..18703430 (25 bp)
GAATTACACTGTATGCCGTGCAGGA
LOC_Os10g35570
Os.46599.1.S1_at--3--5411Chr10:18703434..18703458 (25 bp)
GAAGCTTTACGAACCTTTGTCAGAC
LOC_Os10g35570
Os.46599.1.S1_at--458--251Chr10:18703792..18703816 (25 bp)
ATATCGTCAAGCGTATTCTAGTTGA
LOC_Os10g35570
Target Sequence 
TAGCACTCCCACTGCAAGCAAAGATGTTGATCTTCGTGCTGTGAAAGTTCCACCTGTGATATTTCTGGAAAGACCATTTA
TGGTTAATTTATGCCTTACAAACCAATCAGACAAGACAGTTGGCCCTTTTGAAGTATTTTTAGCACCAAGCGTACTTGAT
GAAGAGAAATATGTTCTGGTCAATGGATTACAGAAGTTGGTTTTGCCACTAGTTGAGGCTTTTGAATCCATCAACTTTGA
CTTGAGTATGGTAGCTACTCAAGTAGGCGTGCAAAAAATTTCTGGAATTACACTGTATGCCGTGCAGGAAAAGAAGCTTT
ACGAACCTTTGTCAGACATAGAGATTTTCGTTGATGCAGAATAGAACAACGCTGCATTGGNAAACAGACACAGATGTTCC
CCCATGTTTTCATCATCTGAGAAAGGGATATANNCATATCGTCAAGCGTATTCTAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis