Browse Element(s) Details


Os.46617.1.S1_at

Description gb:CB620560
DB_XREF= gi:29615548
DB_XREF=OSIIEa05N23.r
CLONE=OSIIEa05N23
TID=Os.46617.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0027P10.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4156011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41550Os.46618.1.S1_at11/1110+21994509..21997928Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g41560Os.46617.1.S1_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed
LOC_Os10g41560Os.31379.1.S1_s_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46617.1.S1_at--1132--191Chr10:22003817..22003841 (25 bp)
ATTTGCGGAAGATGCAGTATACGAG
LOC_Os10g41560
Os.46617.1.S1_at--418--6331Chr10:22003807..22003831 (25 bp)
GATGCAGTATACGAGGAGCAAATTG
LOC_Os10g41560
Os.46617.1.S1_at--733--4791Chr10:22003455..22003479 (25 bp)
GCTCCCATTTGTAATCCATCATTCT
LOC_Os10g41560
Os.46617.1.S1_at--951--211Chr10:22003449..22003473 (25 bp)
ATTTGTAATCCATCATTCTGCTTCT
LOC_Os10g41560
Os.46617.1.S1_at--245--9771Chr10:22003444..22003468 (25 bp)
TAATCCATCATTCTGCTTCTACCTT
LOC_Os10g41560
Os.46617.1.S1_at--331--431Chr10:22003438..22003462 (25 bp)
ATCATTCTGCTTCTACCTTTGTCAG
LOC_Os10g41560
Os.46617.1.S1_at--945--3591Chr10:22003436..22003460 (25 bp)
CATTCTGCTTCTACCTTTGTCAGAC
LOC_Os10g41560
Os.46617.1.S1_at--152--3051Chr10:22003370..22003394 (25 bp)
AATCCGTCTGCTTGTCAACCAGCAG
LOC_Os10g41560
Os.46617.1.S1_at--940--7171Chr10:22003365..22003389 (25 bp)
GTCTGCTTGTCAACCAGCAGAAAAG
LOC_Os10g41560
Os.46617.1.S1_at--677--6991Chr10:22003331..22003350 (20 bp)
GTACATGTAAAATCGGTTGTCTTTT
LOC_Os10g41560
Os.46617.1.S1_at--296--7051Chr10:22003319..22003344 (25 bp)
GTAAAATCGGTTGTCTTTTATTCAG
LOC_Os10g41560
Target Sequence 
ATTTGCGGAAGATGCAGTATACGAGGAGCAAATTGTATGGGCTTCGTCAGATGCCTACCCATGGGGATGCTATGTTTACC
AAGTTCAGAGCAAGTCACTGCAATTCATGGNGATGCGGCGGCCAAAAGAAGAGTGTGAGCTAAAACCTAAGAAGGTATCA
GAGTCTTATGCCCAGCAAGCATTGGAGAGGTCCTGAGATGAGAGGCAAACATGCCATGCATTAGTGTAGACACTAGACAC
ATGTAAAGTGATGTACNATAACATAGGTGNGTATACATGCGTGTAAGAAAGGAGTCAGGAGCAGGACAGATCCAGCATTT
TCGTGCAAGATGTGTCCGAAATGAGAGTTTCAGGTTTACATTTGCTCCCATTTGTAATCCATCATTCTGCTTCTACCTTT
GTCAGACCCTTGGGGTCAAAGCTTGTACGTGGAGCACTTGTACCAAACAATCCGTCTGCTTGTCAACCAGCAGAAAAGGG
GTGGTAAATTTTGTACATGTAAAATCGGTTGTCTTTTATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis