Browse Element(s) Details


Os.46652.1.S1_at

Description gb:NM_197161.1
DB_XREF= gi:37535681
TID=Os.46652.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-directed RNA polymerase I subunit, 5-partial (OSJNBa0041P03.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) putative DNA-directed RNA polymerase I subunit, 5-partial (OSJNBa0041P03.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3529011/11DNA-directed RNA polymerase, beta subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35240Os.46899.1.S1_at11/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46127.1.S1_x_at8/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35240Os.46382.2.S1_x_at2/1110+18503780..18506439Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35250Os.20281.1.S1_at11/1110+18508136..18513597hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g35260Os.46127.1.S1_x_at11/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46127.1.S1_at10/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35260Os.46382.2.S1_x_at2/1110+18517223..18519477Rf1 protein, mitochondrial precursor, putative
LOC_Os10g35270OsAffx.71.1.S1_at5/1110+18520584..18520868hypothetical protein
LOC_Os10g35270OsAffx.71.1.S1_x_at4/1110+18520584..18520868hypothetical protein
LOC_Os10g35280Os.46653.1.S1_at11/1110+18522637..18527636Uncharacterised protein family containing protein, expressed
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0030422biological_processRNA interference, production of siRNA
GO:0031047biological_processRNA-mediated gene silencing
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46652.1.S1_at--333--8111Chr10:18529261..18529285 (25 bp)
GGACCCATGCTTGCTTCTTATGGAT
LOC_Os10g35290
Os.46652.1.S1_at--956--2271Chr10:18529183..18529207 (25 bp)
AAATGTGAGATTTTCCTTGGACCTG
LOC_Os10g35290
Os.46652.1.S1_at--1109--10851Chr10:18529167..18529191 (25 bp)
TTGGACCTGTATACTATCAACGCCT
LOC_Os10g35290
Os.46652.1.S1_at--346--2611Chr10:18529149..18529173 (25 bp)
AACGCCTTCGTCATATGGTCTCAGA
LOC_Os10g35290
Os.46652.1.S1_at--903--171Chr10:18528918..18528938 (21 bp)
ATTTCAGGTTCGTACCACAGGGCGA
LOC_Os10g35290
Os.46652.1.S1_at--473--10471Chr10:18528792..18528816 (25 bp)
TTACCTCCTACATGACAGGCTCCAT
LOC_Os10g35290
Os.46652.1.S1_at--620--251Chr10:18528751..18528775 (25 bp)
ATATCGCGGACGTGTGCTCCATCTG
LOC_Os10g35290
Os.46652.1.S1_at--194--9811Chr10:18528646..18528670 (25 bp)
TAAAACCTCCCAAGAACTTTGCCTG
LOC_Os10g35290
Os.46652.1.S1_at--720--591Chr10:18528581..18528605 (25 bp)
ATGCCTTACGTCTTCAGATACCTGG
LOC_Os10g35290
Os.46652.1.S1_at--793--1211Chr10:18528566..18528590 (25 bp)
AGATACCTGGCCTCCGAGTTGGCGG
LOC_Os10g35290
Os.46652.1.S1_at--785--331Chr10:18528533..18528557 (25 bp)
ATAAAGTTGGAGCTTCGGCTCAGCA
LOC_Os10g35290
Target Sequence 
GGACCCATGCTTGCTTCTTATGGATTTAATTACCATGGAACAGAAATTCTATATAGTGGAGTTTTTGGCACTGAGATGAA
ATGTGAGATTTTCCTTGGACCTGTATACTATCAACGCCTTCGTCATATGGTCTCAGACAAATTTCAGGTTCGTACCACAG
GGCGAATAGATCAGATCACAAGACAGCCAATAGGAGGAAGGAAATACGGTGGAGGGATTCGGTTCGGTGAGATGGAGCGA
GACGCGCTTCTCGCTCATGGTGCCTCTTACCTCCTACATGACAGGCTCCATTCCTGCTCCGACTACCATATCGCGGACGT
GTGCTCCATCTGCGGGAGCTTGCTGACGGCGACGGTGATCAAATCCGAAAGCCAGAAGAAAGCCAAGCGCGACATGCTCG
GGCTCCCCACCGTAAAACCTCCCAAGAACTTTGCCTGCCAGGCCTGCAAAACAAGCAAAGGGATGGAGACCGTCGCCATG
CCTTACGTCTTCAGATACCTGGCCTCCGAGTTGGCGGCCATGAACATAAAGTTGGAGCTTCGGCTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis