Browse Element(s) Details


Os.46655.1.A1_at

Description gb:NM_197151.1
DB_XREF= gi:37535661
TID=Os.46655.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0041P03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041P03.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3519011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35160OsAffx.30677.1.S1_x_at10/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.5.S1_x_at9/1110+18440015..18443070hypothetical protein
LOC_Os10g35160OsAffx.30677.1.S1_at8/1110+18440015..18443070hypothetical protein
LOC_Os10g35160Os.53605.1.S1_at2/1110+18440015..18443070hypothetical protein
LOC_Os10g35170NANA10+18444113..18447526N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor, putative, expressed
LOC_Os10g35180Os.46480.1.S1_at11/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35180OsAffx.27609.1.S1_at1/1110+18455285..18460957ABC-2 type transporter family protein, expressed
LOC_Os10g35190Os.46655.1.A1_at11/1110+18464936..18468703expressed protein
LOC_Os10g35200Os.27667.2.S1_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.2.S1_x_at11/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35200Os.27667.1.S1_at10/1110+18469134..18476453Katanin p80 WD40-containing subunit B1 homolog 1, putative, expressed
LOC_Os10g35210Os.46654.1.S1_at10/1110+18478183..18482380expressed protein
LOC_Os10g35220Os.15361.1.S1_at11/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.1.S1_at9/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.2.S2_x_at7/1110+18484012..18490074KH domain containing protein, expressed
LOC_Os10g35220Os.46382.4.S1_x_at3/1110+18484012..18490074KH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46655.1.A1_at--867--2991Chr10:18468154..18468178 (25 bp)
AATGATGCCTAATGCGCCTTTCATG
LOC_Os10g35190
Os.46655.1.A1_at--411--3591Chr10:18468252..18468276 (25 bp)
CATTCAATTATCCTCTCCAACAAGA
LOC_Os10g35190
Os.46655.1.A1_at--253--8151Chr10:18468278..18468302 (25 bp)
GGAAATCCACAGTTCTTCAGTGCCC
LOC_Os10g35190
Os.46655.1.A1_at--471--4311Chr10:18468302..18468326 (25 bp)
CCTTTCCAGATGCAACTACCAGATG
LOC_Os10g35190
Os.46655.1.A1_at--933--10851Chr10:18468327..18468351 (25 bp)
TTGGACTGGATCAAGGCTCAGCCTC
LOC_Os10g35190
Os.46655.1.A1_at--1131--791Chr10:18468425..18468449 (25 bp)
ATGGGCAACCCATTTCAGTCGATGC
LOC_Os10g35190
Os.46655.1.A1_at--643--6351Chr10:18468445..18468469 (25 bp)
GATGCCACTTGGACAGGGAATGCCT
LOC_Os10g35190
Os.46655.1.A1_at--672--1051Chr10:18468517..18468541 (25 bp)
AGGTGGTTTCGGAGTCATGCCTGAT
LOC_Os10g35190
Os.46655.1.A1_at--238--3471Chr10:18468564..18468588 (25 bp)
CAGGTAGGGATCTTTCTGGCCAAGG
LOC_Os10g35190
Os.46655.1.A1_at--699--7751Chr10:18468596..18468620 (25 bp)
GGTGTTCTAGCGCAGATGCCCATGC
LOC_Os10g35190
Os.46655.1.A1_at--849--651Chr10:18468623..18468647 (25 bp)
ATGCAAATGCAGATGTCACTTCCCC
LOC_Os10g35190
Target Sequence 
AATGATGCCTAATGCGCCTTTCATGTTTCCTCCAATGCCTCATCAGCCAAACTTCATGATGCCCATGAATATGAATCAGC
CATTAATGTCCAACACATCATTCAATTATCCTCTCCAACAAGATGGAAATCCACAGTTCTTCAGTGCCCCTTTCCAGATG
CAACTACCAGATGTTGGACTGGATCAAGGCTCAGCCTCGGGGGTCCAACCTACGCCACCTGGTCCTTTAAGCTTCCCTGA
GGGGCTTCAGCGTCCATGGGGCATGGGATTGATGGGCAACCCATTTCAGTCGATGCCACTTGGACAGGGAATGCCTGAAG
GTGCAGGTGAACCTCAGGGAGGTGGCGGAATGGTTTTCCTGCAAGGTGGTTTCGGAGTCATGCCTGATGGCTCAATGAAT
TCAGGCATACCAGGTAGGGATCTTTCTGGCCAAGGTGACCGGGGTGTTCTAGCGCAGATGCCCATGCCGATGCAAATGCA
GATGTCACTTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46655.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis