Browse Element(s) Details


Os.46667.1.S1_x_at

Description gb:NM_196912.1
DB_XREF= gi:37535183
TID=Os.46667.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46667 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative WD domain containing protein (OSJNBa0071K18.1), mRNA.
PROD=putative WD domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3277011/11WD-repeat protein 26, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32730Os.8788.1.S1_at11/1110+16803761..16808452HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed
LOC_Os10g32740Os.46668.1.S1_at11/1110+16811397..16816430von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32750OsAffx.18492.1.S1_at11/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32750OsAffx.31678.3.S1_x_at1/1110+16823554..16825374von Willebrand factor type A domain containing protein
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46667.1.S1_x_at--716--10391Chr10:16830347..16830371 (25 bp)
TTTTGTTGCCTGGAGCCCAAATGAC
LOC_Os10g32770
Os.46667.1.S1_x_at--187--5651Chr10:16830325..16830349 (25 bp)
GACAGAATGCTGCTCACTTGTGGTA
LOC_Os10g32770
Os.46667.1.S1_x_at--833--1951Chr10:16830284..16830308 (25 bp)
ACTGTGGAACGTTGCTACTGGTGAA
LOC_Os10g32770
Os.46667.1.S1_x_at--124--791Chr10:16830215..16830239 (25 bp)
ATGTGCATGGTTCCCTAATTCGGAG
LOC_Os10g32770
Os.46667.1.S1_x_at--915--3091Chr10:16830188..16830212 (25 bp)
AATAGTATGTGCCAGCTGTGAGCCT
LOC_Os10g32770
Os.46667.1.S1_x_at--298--4731Chr10:16830174..16830198 (25 bp)
GCTGTGAGCCTGAAAGTTCTCCAAA
LOC_Os10g32770
Os.46667.1.S1_x_at--495--6171Chr10:16830149..16830173 (25 bp)
GAGGATCTTCACTTGTGACCTAGAA
LOC_Os10g32770
Os.46667.1.S1_x_at--504--7411Chr10:16830078..16830102 (25 bp)
GTGATATAGCTGTGACTCCTGATAG
LOC_Os10g32770
Os.46667.1.S1_x_at--827--4871Chr10:16829957..16829981 (25 bp)
GCTATCTCTCTCTGGTGATGGACAA
LOC_Os10g32770
Os.46667.1.S1_x_at--622--1111Chr10:16829884..16829908 (25 bp)
AGTGAAAGTTCTACTGCGGCGGATA
LOC_Os10g32770
Os.46667.1.S1_x_at--720--7731Chr10:16829809..16829833 (25 bp)
GGTGGATCAAACTCTCTGTTCATAG
LOC_Os10g32770
Target Sequence 
TTTTGTTGCCTGGAGCCCAAATGACAGAATGCTGCTCACTTGTGGTAATGGAGAATCAGTAAAACTGTGGAACGTTGCTA
CTGGTGAATGCAGTCTTAAATTTAGCAGCTCAGTTGGCCATATTATCAATTCATGTGCATGGTTCCCTAATTCGGAGAAA
ATAGTATGTGCCAGCTGTGAGCCTGAAAGTTCTCCAAAGAGGATCTTCACTTGTGACCTAGAAGGTCAAGAACTGGAATC
ATGGGTTGGAGATAGAATACCTAAAGTCAGTGATATAGCTGTGACTCCTGATAGCAAACATCTTATCTGTGTATGTTCCA
ATGAAATTTGGATTCGAGAACTTCCAAAGGGGCGGGAATGGAGAATACGTGAGCAGCAGACGATTTCGTCGCTATCTCTC
TCTGGTGATGGACAATCACTGATTGTCAACCTCAACAGCCAGGAAATTCATTTGTGGAGAATCAGTGAAAGTTCTACTGC
GGCGGATAATAAATTCAAGGGACACAAGCAAGGAAAGTTTGTGATTAGATCTTGCTTTGGTGGATCAAACTCTCTGTTCA
TAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46667.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis