Browse Element(s) Details


Os.46672.1.S1_at

Description gb:AK119329.1
DB_XREF= gi:37988952
TID=Os.46672.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0068N06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-B04, full insert sequence.
FL= gb:AK119329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3129011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31240Os.46565.2.S1_x_at11/1110+16053967..16057134expressed protein
LOC_Os10g31250OsAffx.20295.1.S1_at11/1110+16059064..16064038expressed protein
LOC_Os10g31250OsAffx.28164.2.S1_at2/1110+16059064..16064038expressed protein
LOC_Os10g31250Os.52574.2.S1_x_at1/1110+16059064..16064038expressed protein
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein
LOC_Os10g31300OsAffx.27523.2.S1_at11/1110+16088727..16090054hypothetical protein
LOC_Os10g31310OsAffx.27523.3.S1_x_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.3.S1_at11/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31310OsAffx.27523.4.S1_at3/1110+16093294..16094269transposon protein, putative, unclassified
LOC_Os10g31320Os.51176.1.S1_at11/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31320Os.11040.1.S1_x_at10/1110+16096614..16097539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51848.1.S1_x_at11/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31330Os.51929.1.S1_at9/1110+16099462..16100539transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31340NANA10+16108759..16109793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46672.1.S1_at--66--10071Chr10:16085806..16085830 (25 bp)
TAGTACATATAGCTCCCTCTTGGAA
LOC_Os10g31290
Os.46672.1.S1_at--917--2271Chr10:16085847..16085871 (25 bp)
AAATGCCTTTCAACCGGTGGCGAGT
LOC_Os10g31290
Os.46672.1.S1_at--730--6711Chr10:16085870..16085894 (25 bp)
GTTCGTAACTCAAATCTGGGCCATT
LOC_Os10g31290
Os.46672.1.S1_at--850--8431Chr10:16085888..16085912 (25 bp)
GGCCATTCTTTCTCATTGCAACATA
LOC_Os10g31290
Os.46672.1.S1_at--629--2751Chr10:16085914..16085938 (25 bp)
AAGAAAGCAATCTCTGGCCACAGCA
LOC_Os10g31290
Os.46672.1.S1_at--527--8451Chr10:16085928..16085952 (25 bp)
TGGCCACAGCAGGAATCTCCAAATG
LOC_Os10g31290
Os.46672.1.S1_at--410--7451Chr10:16085980..16086004 (25 bp)
GTGTAAGTGGCAATCAGGCATCTTT
LOC_Os10g31290
Os.46672.1.S1_at--917--911Chr10:16085995..16086019 (25 bp)
AGGCATCTTTTTCAGCACAACAGCG
LOC_Os10g31290
Os.46672.1.S1_at--702--5471Chr10:16086180..16086204 (25 bp)
GAACTCGAGCTTTCTTATGTCACAT
LOC_Os10g31290
Os.46672.1.S1_at--431--771Chr10:16086226..16086250 (25 bp)
ATGTCTGTTCATTCTCCATGTGTAG
LOC_Os10g31290
Os.46672.1.S1_at--927--9771Chr10:16086280..16086304 (25 bp)
TAAGGTGTGGTCTCTTGCCGTACTA
LOC_Os10g31290
Target Sequence 
TAGTACATATAGCTCCCTCTTGGAATGCAGCAGCTCACAAGAAATGCCTTTCAACCGGTGGCGAGTTCGTAACTCAAATC
TGGGCCATTCTTTCTCATTGCAACATACAAGAAAGCAATCTCTGGCCACAGCAGGAATCTCCAAATGATAATGAAGCAGA
GCAGCAGGAAGAAAGTGTAAGTGGCAATCAGGCATCTTTTTCAGCACAACAGCGGGCAGCTGCTGGTCATGGTGGAGTAA
GGGATGATGAAGCTGGACCGAGTGGGACAAAGCCAAATGATGAAACAAAAGACGATGACGAAAAGAAGATGTCGGTTAAT
TTGAGTTCAAGAACACCAATAAAACGTGACAGTGTGAGTTAGTATAATATTGTTGAACTCGAGCTTTCTTATGTCACATA
TATGTTCCTTTCTTAAGAACATGTCTGTTCATTCTCCATGTGTAGTAGTTTATATGGTTGTTGCTTGCATGTACTAAGGT
GTGGTCTCTTGCCGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis